Cpip012776.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- mod(mdg4)
- Assembly
- GCA_016801865.2
- Location
- NC:17145041-17146756[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.8e-12 1.8e-09 37.7 0.0 3 39 271 308 270 312 0.94 2 3 0.025 16 5.8 0.0 23 35 339 351 324 355 0.89 3 3 9.4e-10 5.9e-07 29.6 0.0 2 36 376 411 375 417 0.91
Sequence Information
- Coding Sequence
- ATGAACCGAACCGCAGCCGGCATCGCTGCGAACGTGTCCAGCGTCAGATGGGTCGATTTCACCGAGCACATGTCCAGCACCTTCCAGGAGGTCTACGCCAACTCTCTGTACACGGACGTGACACTGGTGCTGGCCGACGGATCGTGCCTGCAGGCCAGCCGGATGGTGCTGGCGATGGCTTCGGAGTTTTTCGAAGATATCTTTAGCTCGGCTAGCAGTTCGATGGTGGCGTTCCTTGGGGGAGGACTGCAGGAGATTAGGGTGGTTATTCCGGATGTGCGCTACGCGGTCATGAAGCAGGTGCTGAACTTTGTGTACACGGGGCAGGTCCACATGAACGGGCGGGAAATGGCGGACTTTATTGAGGCGTGCCAGCTGTTCCAGCTGAAGGGGTTGAGCTACAAGAATGGGGACATTAACGGGATTAAGATTAGCGGGTCGAACATAATCACACCGGAGCAGTACGAGTACGAGGAGCTGCAGGATGCGTTTGCGGAAGAGGTGCCGGATGATGGCGTTGTGGAGTCTGAGGTGGGTTTGGGGGAACCGGTGGTGCCGGAGGTGGAGAATGTGGCGGAGAAGACTGCGGTTGTGGGAGATGGTTTGAACCAGTATTATGAAGTACAGGTGATGGACATGGAAGAGCTGGAAACGTCCACGAGTGGGCAGGACATCAAGCAGGCCATGGCATCGTTCACggtgttggaacagagcgaagaTCTGGCAAATCAAACCCACGAATCCGACTCGAGCATGAACGAAAGTGGCGAAGGATCGGCCAAGAAACGACTTAAAAACTGCGAGTACGGAGACCGATTGGAGGAAGCCATCAACAGCATAGTTCAAGGTGGCGTCAGTTTTCGCACGGCTTCGATTCAGTACGGCATACCGAAAACGGTCCTCTGGCGAAAAGCCGTCAAGGTTCCAAACTACAAAGCCGAACGGCTGGAACTTCCCTCGCCGCGAAAGGAAGCCATCGAGGCGCTGAAATCCGGCGAGAAACTGCTGAACATCAGCAAACGATTCGACATTCCGCTGTCCACGCTGCACCGGGACAAGCTGAAACTGTTCAGCGAGGGTGCCCTGCCGGAGAGCGTGCCTCTCAAGCAGCGGGACAAAACGTCCCGTGATCGGATCCTGGAAGCCGCCCAGCAATGCATAGACGGCGTGCTGTCCCAGTCCGAGGCGTGTAAACTTTACCaactgccaaaaaccacaatctGGAGAAAGATCAAAGCGCTTCGGGCGGCGGAACGGATCAAAACGGAGGGTGGTGCAAGTCTGGAGGGTGACGGTCACGTGGAAGGCAGTTCGTCGACGACGAGAAGAGACGGAACGGTTGAACTGCTGGTAGAAACGCTGGACCAGGATGAAGCCGCGGGGAAGGTGGAGCATTTGGAGGAGCAGGAGTACGTTGTGCTGGTGTGA
- Protein Sequence
- MNRTAAGIAANVSSVRWVDFTEHMSSTFQEVYANSLYTDVTLVLADGSCLQASRMVLAMASEFFEDIFSSASSSMVAFLGGGLQEIRVVIPDVRYAVMKQVLNFVYTGQVHMNGREMADFIEACQLFQLKGLSYKNGDINGIKISGSNIITPEQYEYEELQDAFAEEVPDDGVVESEVGLGEPVVPEVENVAEKTAVVGDGLNQYYEVQVMDMEELETSTSGQDIKQAMASFTVLEQSEDLANQTHESDSSMNESGEGSAKKRLKNCEYGDRLEEAINSIVQGGVSFRTASIQYGIPKTVLWRKAVKVPNYKAERLELPSPRKEAIEALKSGEKLLNISKRFDIPLSTLHRDKLKLFSEGALPESVPLKQRDKTSRDRILEAAQQCIDGVLSQSEACKLYQLPKTTIWRKIKALRAAERIKTEGGASLEGDGHVEGSSSTTRRDGTVELLVETLDQDEAAGKVEHLEEQEYVVLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00401621;
- 90% Identity
- iTF_00401621;
- 80% Identity
- iTF_00400761;