Cpip013436.2
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- retn
- Assembly
- GCA_016801865.2
- Location
- NC:39545183-39687980[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.8e-25 5.7e-22 78.4 0.0 2 89 309 394 308 394 0.96
Sequence Information
- Coding Sequence
- ATGGACCTGTGCGAGATCCAGTACGGTGGTGGCACCACCGTGGTCACCGCGGTCCCTCCGGAGGCCTCCGCCGATCTGGAATCGCCGCCGTTGTCGATCCGCACCGAGGAGGACTCCGCCAGCAGCACTGGTGGTGAAGCCGGTGACGAAGGCGTTAATGTGGTAGCCGCAGCTGTGAGTTCCACACCGACAACCGAGTTTGACCAGCCAACGTCCCAGAAGATGACATCCGGGATGGAGTTTGGCCGCAGTCCAGATCATCACTCAGAGCTAAATCCCCACGTCGGCGGTCAGTTCGGAGCGGGCACCGGCCATCACCATCACCCGCTCGGTGTCCTCGGCAACCTGTCGGCGCTCAACATGAACGTCCAGAACCTGTCCGGGCTGTCCGGTCTGGCGTCGGCCGTCGGTCTCCAGCACGGGGACGTCCTGGAGAAGCTCAAGATGCAGGTGCGGGACATGAAGGTGGGCCTCGGCGGCGGGGATTCCGCCGGAGCTGACTTTGCGGCCTCGTTGCATGCAAGTTTCGGTGCAAGTGCAACGGCCGCCCTgcaacatcagcagcagcagctggctGCGAGTGGGATTGGGGGGATGTTTGGTGGGGATGGGGGTCACCGAGGGGGGATTAGTGCACAGGGCGGGGGACAAAGTAACAGTGTAAACAGTGGTGGGgctagtggtggtggtggtggaagtgGAAGTGGGGGTGCTACAAGTGGGGGAAGTGTCACGTCGAATGGAGCGGGAAATTGGGCGTTGCCGAGCGTGCCACCGGCTGCAAAGGATGGAAACCCCGGCTCGAATTCCTCCACCTCGAGCGAGACATCCAACTCGTCCCAgcagaacaacaacaacggtTGGAGCTTTGAAGAGCAGTTCAAACAAGTCAGACAGctctACGAAATCAACGATGATCCCAAGCGGAAAGAGTTCCTCGACGATCTGTTTCTGTTTATGCAGAAAAgagGCACCCCCATCAACCGCCTCCCCATCATGGCCAAGTCGGTGCTGGATCTGTACGAGCTGTACAACCTGGTGATTGCCCGCGGCGGCCTCGTCGACGTGATCAACAAGAAGCTCTGGCAGGAGATCATCAAGGGTTTGCATTTGCCGTCGAGCATCACCAGTGCGGCGTTCACGCTGCGGACACAGTACATGAAGTATCTCTACCCGTACGAGTGCGAGAAGAAGAACCTGAGCACGCCGGCGGAACTGCAGGCCGCGATCGACGGGAACCGGCGCGAGGGTCGACGCTCCAGCTACGGCCAGTTTGAGTCGCCGTCGGTACAGCGCTCTCCGATCCCACCCCAGGGcatccagcaaatgtccccacTCTCGCTGGTGACCCACgtgaaccagcagcagcagcaccaccgTCTGCTGGGCGCTCCCAACGTTGGCCAGATCCCGAACCTGCTCCCAGCGGAATTTGAACAGCGCATGCTCGACTACATCAAGCTGTTCCAGCCGAAGGAGACCAAACGCGAGCAAAGTCCCGAACAGATGACGCTGAACGCGCTGGAAATGTCCCGCGTGGCCCTTTGGAACATGTACAACAACAACACGAGCCCACCGAACTCGCTGCAGACGGCGAGCCCACCGGAAATGCAAAGTTTGTTCAATTACAGGGAAGCGCTCAACCTGGCCGAGAGTCCGCCCCACCACCTGTCGATCAAGCGCGAGCGGGACATCCCGATGGACTTTACCGGCGATCGCGCCGGCCGAGACTTCCACGCCGGCCTGCCCCCGGCCAAGCGCAGCAACAACAACTCGATCGCGGCCGTAGCCGTTGCCCAGCTCCAGCAGCAACATCACCACAACCTAGGCGGCCGCTCGCTAACCCCCCAAAAGCTGAACATGTCCTCGCACGACGAAGACGACGCCCGCTCCGACGGAACACCCATCAACCTGCGCGGAGGACCCGAAAACGGCACCCTCCGCCATCACCACGACGACGACCTTCCCGAGGACGAAGAggaagacgacgacgaggagATGACCATCGCCGACGACGAAGCCCACCACCCGCTAGCCCTGAACCGCATCACGGAACACGCCGCCGCCGCCCTCGTCGCAGCCCAGCGCGAGCAAGCAGCCCAGAACCATCTGGCCAGTCTCAACCTGAGTCTCCTGGAGCGGGAACGCTGCGGCAGCGCCGACAAACTCAAACGTCAGCAGGCGCAGCTCCACCTGGAACAACTCCAGCGCGAACAGCTACTGCACcatcagcagcaacagcagcagcagcaggccctCCAACGCGAACGGGAACGTGAGCTGCTGCAGCGCGAACGGGACATCCAAAAGGCCAAGgaactgcagcagcagcagcttcttcAGCAACAACAGCAGGAACAGAATCGTCTGCGAGaggcgcagcagcagcagcaacaacagcagcagcagaatgGGGATCGGCTCAGTGGGTTGGATAATGTGGGAAGCAACAACACCAGCACCAGCAGTGATCACAGCCAGAATCGGGCCGGATCGGCGAATGGAGGGGCGTTCAGTCCGGGATCGGCGGGAGGAGCCGgtggacagcagcagcagcagcagatgggCATTATGGGCATGCAGTTTAAGCTGATCAGTAGAGGTGACGCCACCAAGGGCGACCAGCAGCTGGTCGTGTCGATGGAGTTCAACGGCGTCCAGTACGAGGGCGTCCTGTTTGCGAACCCCTCGTCCACCGGATCTCCGCGCTCCGCGTCCTCACCGCAGGCCAACGCTTCCAGCAACGCCAACAacaccagcaccagcagcagcagcagcagcagtaatcCACGCATCCGGGCGACCAGTTCACCGTCGACGGCCGGAGGGCTCCTGCTGACCACGGCACCCTCGGCGGACGCGCTCGCAGGTTCCCCGGCCGGAAGCTTGAGCAGCAACAGCTCGACGTCGGCGGCGGCCTCCCCCGTCGGCTCTTCGTCGCTCATTTCGCCCGCCAAAAGTTCGTCGCTCGATGAGCCGATGGTCGGTGGGGCCGGACTGACGCCGGTGGTGGTCGCGCCGCGGCCCATCGTTTCCTAG
- Protein Sequence
- MDLCEIQYGGGTTVVTAVPPEASADLESPPLSIRTEEDSASSTGGEAGDEGVNVVAAAVSSTPTTEFDQPTSQKMTSGMEFGRSPDHHSELNPHVGGQFGAGTGHHHHPLGVLGNLSALNMNVQNLSGLSGLASAVGLQHGDVLEKLKMQVRDMKVGLGGGDSAGADFAASLHASFGASATAALQHQQQQLAASGIGGMFGGDGGHRGGISAQGGGQSNSVNSGGASGGGGGSGSGGATSGGSVTSNGAGNWALPSVPPAAKDGNPGSNSSTSSETSNSSQQNNNNGWSFEEQFKQVRQLYEINDDPKRKEFLDDLFLFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQFESPSVQRSPIPPQGIQQMSPLSLVTHVNQQQQHHRLLGAPNVGQIPNLLPAEFEQRMLDYIKLFQPKETKREQSPEQMTLNALEMSRVALWNMYNNNTSPPNSLQTASPPEMQSLFNYREALNLAESPPHHLSIKRERDIPMDFTGDRAGRDFHAGLPPAKRSNNNSIAAVAVAQLQQQHHHNLGGRSLTPQKLNMSSHDEDDARSDGTPINLRGGPENGTLRHHHDDDLPEDEEEDDDEEMTIADDEAHHPLALNRITEHAAAALVAAQREQAAQNHLASLNLSLLERERCGSADKLKRQQAQLHLEQLQREQLLHHQQQQQQQQALQRERERELLQRERDIQKAKELQQQQLLQQQQQEQNRLREAQQQQQQQQQQNGDRLSGLDNVGSNNTSTSSDHSQNRAGSANGGAFSPGSAGGAGGQQQQQQMGIMGMQFKLISRGDATKGDQQLVVSMEFNGVQYEGVLFANPSSTGSPRSASSPQANASSNANNTSTSSSSSSSNPRIRATSSPSTAGGLLLTTAPSADALAGSPAGSLSSNSSTSAAASPVGSSSLISPAKSSSLDEPMVGGAGLTPVVVAPRPIVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00401492;
- 90% Identity
- iTF_00401492;
- 80% Identity
- -