Ccup002493.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284486.1:5440025-5444090[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0025 0.27 13.4 3.4 1 23 133 155 133 155 0.97 2 14 0.0044 0.49 12.6 5.0 1 23 161 183 161 183 0.97 3 14 1.9e-05 0.0021 20.0 1.5 1 23 189 211 189 211 0.98 4 14 3.1 3.4e+02 3.6 3.6 1 23 217 239 217 239 0.97 5 14 0.00096 0.11 14.7 0.6 2 23 428 449 427 449 0.97 6 14 0.076 8.5 8.7 1.6 1 23 455 477 455 477 0.96 7 14 0.28 31 6.9 4.7 1 23 483 505 483 505 0.98 8 14 0.34 38 6.6 3.8 1 23 511 533 511 533 0.97 9 14 0.00032 0.036 16.1 6.8 1 23 539 561 539 561 0.98 10 14 0.0002 0.022 16.8 1.4 1 23 567 589 567 589 0.98 11 14 0.0027 0.3 13.3 4.9 1 23 595 617 595 617 0.98 12 14 0.098 11 8.3 0.2 3 23 625 645 623 645 0.97 13 14 0.11 12 8.2 4.6 1 23 666 688 666 688 0.98 14 14 0.013 1.5 11.1 1.7 3 23 696 716 694 717 0.95
Sequence Information
- Coding Sequence
- ATGAATGAAGCCACCAacgatttaaacaaaaatgtagacATTTCCAATATTAAGCAGGAAAATATACAGCATGATGATAACTATACAGTATTAGGTACAGAACAAGAAGCAGGCGACAAAAAAAGCGATAAAAACGGTAACGACATGTATGATAAGATCGACACCGTAATTAAAGAAGAGTTAAACCACAGTGATGACAATTCTAGTTTATTAAGTGTAAATCCAGAACAGTGTTTTATTAAAGTTGAAGATTCAGAACAAACTTGCTATGATAGTGatgaaaagaatttaaatttaaattccaaaaccGGCAATAATCAGACGGGTGCAAATAACAAGACTGTAAAGAAATCTAAGTTGAAGCGCCGCCAGACAACGTACACTGGAGCAAAGCGGTACAGTTGCAAGctttgtgattacaaatgtgTACACAAAGTGGATTTAAATGCTCATCTGGTGAAACACACTGGAGAGAAACCGTTTAATTGTAGCTTTtgcgattataaatgtattcGGAAAAGATACTTAAATTCCCATATGGCAAAGCATGCAGGGGAGCAACAATTTAGCTGCACAAATTGTGATTCCAAGTTTTCAAATGAATCCGACCTGAAAGCTCACCTCAAAAAACATACAGATGACAAACCGTTTAGTTGCACCTTTTGTGATTATAGATCTGTATGTAAATTGAATTTAGATAAGCATTTGAAGGTTCATACGGCAGCGACAACTAAATATCCAAATCAAGGTGTTAACGAAGgttccAATATTAAAACTGAAATCGAAGAATCCAGAACTACTACAAACCCTTCTATTAAGCAAGAAAATGTCTTACATGATGATAACTATACAGTATTAACCATAGAGCCGGAAAAAGTGGATTACAAAGATAGTAACAGACCCGATCTTGCAAAGCACACAGAAGAAAAGCCGTTCAACTGCACCTGTTGTAGTTACGAAACACAAACCAGAGAGAAACGTTTCAGCTGCACACATTGCGATTACAAATgtATGCAATGCGACGAGGCCAATATCAATGATATCAatactgaaaacatttttgtgaaacaaGAAGCTTGTGAGGATGATGATTACCATTCATCCATAAAACAAGAaggattaaatataaaaaaagATATGTGCGGGTTATTATCAGTAAAACAggaagaatttgaaattaaagaTGAAAATTCAGATACGTCTATTGAATATAAACGTGAAAAATGTAACCCCAACGATCATGCAAGCAATCGAAGAAGCACAACAGAAAAAGCATGGTTAACTTGCAGTTCTTGCGATTATAAAACTATCAAACCATCTTATTTACGTGATCACATGAAAATTCATTCAAAGCATAGACCATTTAGTTGTACGTTTTGCGATTATAAGTCTCTGAGAAATAATAACGTAATCGAACACATGAGAAGACATACTGGGGAACGACCATATCACTGTTACCTCTGTAATTATACCAGCATTCGAAAGCATCGATTAGTTGAGCATTTGAAAGTTCATAGTGGTGATAGACGCTATAGCTGCACCTGCTGTGATTTTAAGGCGATTAGAAGACAGGAGTTAACAAGACATATGACAAGGCATACgggagaaaaaccatttagcTGTAGTTTTTGCAAATACACATGCAGTAGGAAGGAGCAACTAACTCGTCATTTGAGATAtcacacaggagaaaagccatttagCTGTAACatttgtgattataaaagtGTAGAGAAAATGCAGTTGACTTATCATATGAGAACACACAACAaggataaacaatttaaatgcaTGTTGTGCGACTACAAGTGTTCcgaaagaaaaactttaaatcgTCACATTAAAagtcatactggagaaaaaccgttTGGATGTGATGTGTGCGACTACAGAGCAATAGCTAAATTTACTGTGCGGAGGCACATGAGGATTCATGAGAACAAACCAACTGCATCTGAATCAGTTAATGATacttttattgaagaaaaaattaaattcaagtgCACCCTTTGTGATTACAAGTGTTTAGAGAAAAGGGACTTGAAAGATCACCTGAGAAAACACACTGCTGAAAAGATCTTTGGTTGTGATTTGTGCGAGTACAAGGCGAGGCTTAAGTGGAATTTACGGAAGCACATGAAGATTCATCATAAGAACAAACCAGCTGCAACTGAATTAGCGAACGATACTTTTATTGAAGAAAACACGGATAAAGTGAAAAATCTCTCCAGTGTTGATTATGAAGAACATCATTTTATTGGATTAATTGATAATAAACACACAGCGGTTATTAAAGAAGAAGAGTTTAATGTCGAAAAagatatgtaa
- Protein Sequence
- MNEATNDLNKNVDISNIKQENIQHDDNYTVLGTEQEAGDKKSDKNGNDMYDKIDTVIKEELNHSDDNSSLLSVNPEQCFIKVEDSEQTCYDSDEKNLNLNSKTGNNQTGANNKTVKKSKLKRRQTTYTGAKRYSCKLCDYKCVHKVDLNAHLVKHTGEKPFNCSFCDYKCIRKRYLNSHMAKHAGEQQFSCTNCDSKFSNESDLKAHLKKHTDDKPFSCTFCDYRSVCKLNLDKHLKVHTAATTKYPNQGVNEGSNIKTEIEESRTTTNPSIKQENVLHDDNYTVLTIEPEKVDYKDSNRPDLAKHTEEKPFNCTCCSYETQTREKRFSCTHCDYKCMQCDEANINDINTENIFVKQEACEDDDYHSSIKQEGLNIKKDMCGLLSVKQEEFEIKDENSDTSIEYKREKCNPNDHASNRRSTTEKAWLTCSSCDYKTIKPSYLRDHMKIHSKHRPFSCTFCDYKSLRNNNVIEHMRRHTGERPYHCYLCNYTSIRKHRLVEHLKVHSGDRRYSCTCCDFKAIRRQELTRHMTRHTGEKPFSCSFCKYTCSRKEQLTRHLRYHTGEKPFSCNICDYKSVEKMQLTYHMRTHNKDKQFKCMLCDYKCSERKTLNRHIKSHTGEKPFGCDVCDYRAIAKFTVRRHMRIHENKPTASESVNDTFIEEKIKFKCTLCDYKCLEKRDLKDHLRKHTAEKIFGCDLCEYKARLKWNLRKHMKIHHKNKPAATELANDTFIEENTDKVKNLSSVDYEEHHFIGLIDNKHTAVIKEEEFNVEKDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -