Ccup014110.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284487.1:54508117-54520023[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.022 2.5 10.4 1.2 2 23 402 424 401 424 0.95 2 11 0.026 2.9 10.1 2.1 1 23 430 452 430 452 0.99 3 11 0.0012 0.14 14.3 4.0 1 23 517 540 517 540 0.93 4 11 5.6e-06 0.00062 21.7 0.9 2 23 557 578 557 578 0.98 5 11 0.0026 0.29 13.3 4.2 2 23 811 833 811 833 0.95 6 11 0.0097 1.1 11.5 5.1 1 23 839 861 839 861 0.98 7 11 0.088 9.9 8.5 0.1 2 23 866 888 865 888 0.93 8 11 0.011 1.2 11.3 3.1 2 23 895 916 894 916 0.96 9 11 0.021 2.3 10.4 1.3 1 23 922 944 922 944 0.95 10 11 0.0014 0.16 14.1 5.2 1 21 948 968 948 970 0.95 11 11 0.0028 0.32 13.2 3.7 1 23 981 1004 981 1004 0.97
Sequence Information
- Coding Sequence
- ATGTATTATATTTCGGAATTCTGTCGAGTGTGTCTTCAGCAGGAGAAGCCGCTCGTCGATATAATGAAGAAAGAAGCCGAACCAGAAACACTAATAAATAAGCTCAAATTATGTGTGTCAGAAGTGGAATGGTCCACGAGTGCAAACATTTTAATGTGTCGGACAtgcatagaaaaattaaattccgcattcgaattcaaacaacaatgtTTACAATCGGCACAAGCACTGGAAAGTTATATCTCCCAACTAATAGGATCGGAAGACGACTCAGAATCAAACCGGGTGGGTGGAAAAGTGTATGTAAGTGTAAATCGTAATGAAGTAAAACAAGAACTTGTCGATGAATATCTCAAAATACAGAAAGAAGAGGAGGAATCTCAAAAACCAACTGCCTTTATTCGTGTAAAGTCCAACCAACAGTTGTATCCACAACTATCAAATATAATACTGACAGCAAACAACTCCCAAACGACcacttttccaaatattttcttaaatttaataccTTCCACAGCAATTAAATATCCgccaaatttaacatttatgaGCAGGACGAACAACGTCAATGTAAAACCACCACCAACGGCGCCGCCGCCATCAACACCTCCAATTAAAGACGCTaatcaaaacatgtttttaaatataaataatacgcTTCACAAAATTTATCCCATTGTGGCACAAAATAAAGAATGCAAGTCTAGTCCGCCACTTATTAAAATTCCCGAAGAAATGAACATATCACGAATTTTAACAGAATCGAAAACAGAAGAGCTCAGTGTAGAAGTGGACCCAATGTGCTTCGATTGCTCAGCAGAAGACGAAAATTCATCGGAAGAAACCACAGACATTGCAAAAGACTGGGAAGAGTTAATTTCGAGCAACAAAATTGGACCGGAAACTCTGAAACCTGAACCAAAATCAAAGTTAGTTCCTGTACCTGCGTTAACTAAAATTTCCGAATCAAATAGTTTTACGCCACCAGTCAGTGACAGTTTAACAATTACACCAAGTAAATTAGGGCCTTACAACCAAATTCAATCGCCTATCAATAATTTCGTACCGATCCGTCCTAAAGTAAAAAAGGACTACATAACAGCCGATCTTGAGGAGAAAATGATGGAGTTTTTAAATGTGGATCATTTTATGGCACCGAAAGAAGCAATCGAGCGCCTGTCTGACCCAATTCCAAAGTCACTGATGTGCGAACAGTGTGGGCAAATATGTGATACATTAAAAGCCTTGCGTTATCACATCAAACAGTTTCACCTCGGTAAATTTCCCTACAAATGCCGATATTGCTCGTCAGTCTATGCTTTACGAACACAATATGAATCACACATGCAGAAGCACTTGATGCATAGTTCTGATGCCTTTTCCAAAGATACTATCACTTTGGAAGATTTGTCAAATCAAAACGAAGCAATTTTGTTCCCTAAATCTGTTCCGGTTGCTCTTAAACCAATCGTGCCTGCTCCCACAACTCCAAGCAATATTGAGCCTGCAGAAAACACAGAAGAAAGCGCAAATGGTGTACAATTCGAGCATAAATGCGAAGTCTGTCCCAGGAGTTTTAACAGCTCCCATGGTTTATCACGTCACAAAGTCAGAAAGCACAATCAACAAACAAGAAGGAAGTATTTCGTGAAAGGAATGAAGAATGCTAAATGTGACATTTGTAATCGAGAATTTTCCACTCAATCGTACTTGCAGTTACATATCAAGTTGCATTATCGTAAAAATGATTATAGGCttaaagttttcaataaagaaaagTACGAGCAAGAAAAGAAGGACGAAGAAAAATTAGAAGTCAGTGATAATGCAGAAGATTGCGAAACAAAACAACCTGAAGAAATGCAAGAAAATGTTGATGTTTTAGAAGAGGCTGAAATCAGTAATTGCGAAAATGTTACAGAACCTTCGTTAGAAGAAATGGCAAAAACTCAAATTGAAGAAAATCAATTGGAGAACAATATTACTGTTAAAGAAAAGGATGCAAAGAAGCCCAAGCTGCCAGAAGGCATAAAAATCAAGATTAActtacgaaatttaaaacaatcggCAAATACTGAAACCCAAAATGAACAAAACTCAGATGAAAGTGATAAGGAAATATTGACAGATAGTAGTGTTGATAAAACAGCAATGGATGTTGATTACACTAAAGAAAGTGAAGAAATGTTTATAAATGGTAACTTGgaaaataatgataatgatgATAGTACTCATTCTGAACATGAAGATAGGATATCGTCAGAAGATTCAAGTGAGGCCTCACATGATATAAACATGGACTGTGATGAAAGTGTGGTAATGTCATCGCCCAATGCTGAGTTTTCCGAAGAAATGGAATCTCCTCAAGACGAGGGGTTGCCTGAAGGGCGACGTCCTCCCTTTAAAATTGTACTGGTAGATGGAAAACCACAATGCAGTTTCTGCTTTAAGCTGTTCAGCAGGAAACACGATCTGAAGAGACACGTTAACAACATCCACTTGAAAGCGATACAGTACGTCTGCCACCTGTGCAATAGTCAGTTTTACGAGGCTTTCCATCTAACGAGGCATTTACGACAACATAACAGCTTTGTACGTTGCACGGGTTGCATGAAGGACTTTAGTGTTCTACGTGATTTGAAGCTTCATATACTCGCAGCTCACGAGAATTCTGCACCTTCTCAGTGTGGCACTTGTGGGCAAGTCTTTCAAAAGATCAAGCACTTGCGAGAGCATATGCACGAACATGACAAGAGTATCATatataaatgtcatatttgtaGTGATGAATTTAAGGAGTCTCGTGAATTATCTAAACATTTAGTCGGACATAGTGGAATGTACTCGTGTAATACCTGCCAAACAACATTCACAACCGAACATGAACTCGAAAATCATATGAAGTGTCACTCTGGAGATCCGACATATGAAGAGAAAAAATACGAATGTGAAATCtgtcataataaatataaaaagaagcGGTACTTGTCAGCACATATGAATAATCGCCATTCGGCAGAGAAACACAAGGTTGAAGTTTCACTCAACAGGGTAGAATCAGAGAATGATTCCTCTTAG
- Protein Sequence
- MYYISEFCRVCLQQEKPLVDIMKKEAEPETLINKLKLCVSEVEWSTSANILMCRTCIEKLNSAFEFKQQCLQSAQALESYISQLIGSEDDSESNRVGGKVYVSVNRNEVKQELVDEYLKIQKEEEESQKPTAFIRVKSNQQLYPQLSNIILTANNSQTTTFPNIFLNLIPSTAIKYPPNLTFMSRTNNVNVKPPPTAPPPSTPPIKDANQNMFLNINNTLHKIYPIVAQNKECKSSPPLIKIPEEMNISRILTESKTEELSVEVDPMCFDCSAEDENSSEETTDIAKDWEELISSNKIGPETLKPEPKSKLVPVPALTKISESNSFTPPVSDSLTITPSKLGPYNQIQSPINNFVPIRPKVKKDYITADLEEKMMEFLNVDHFMAPKEAIERLSDPIPKSLMCEQCGQICDTLKALRYHIKQFHLGKFPYKCRYCSSVYALRTQYESHMQKHLMHSSDAFSKDTITLEDLSNQNEAILFPKSVPVALKPIVPAPTTPSNIEPAENTEESANGVQFEHKCEVCPRSFNSSHGLSRHKVRKHNQQTRRKYFVKGMKNAKCDICNREFSTQSYLQLHIKLHYRKNDYRLKVFNKEKYEQEKKDEEKLEVSDNAEDCETKQPEEMQENVDVLEEAEISNCENVTEPSLEEMAKTQIEENQLENNITVKEKDAKKPKLPEGIKIKINLRNLKQSANTETQNEQNSDESDKEILTDSSVDKTAMDVDYTKESEEMFINGNLENNDNDDSTHSEHEDRISSEDSSEASHDINMDCDESVVMSSPNAEFSEEMESPQDEGLPEGRRPPFKIVLVDGKPQCSFCFKLFSRKHDLKRHVNNIHLKAIQYVCHLCNSQFYEAFHLTRHLRQHNSFVRCTGCMKDFSVLRDLKLHILAAHENSAPSQCGTCGQVFQKIKHLREHMHEHDKSIIYKCHICSDEFKESRELSKHLVGHSGMYSCNTCQTTFTTEHELENHMKCHSGDPTYEEKKYECEICHNKYKKKRYLSAHMNNRHSAEKHKVEVSLNRVESENDSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -