Ccup050957.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284495.1:38583962-38588715[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.12 14 8.0 0.6 3 23 85 105 83 105 0.96 2 12 0.038 4.3 9.6 1.8 1 22 111 132 111 133 0.91 3 12 6.1e-05 0.0068 18.4 0.9 2 23 145 167 144 167 0.93 4 12 0.00013 0.014 17.4 1.8 1 23 380 402 380 402 0.97 5 12 1.1 1.2e+02 5.1 2.1 1 23 434 457 434 457 0.95 6 12 3.6e-05 0.004 19.1 0.8 1 23 463 485 463 485 0.98 7 12 0.0011 0.12 14.5 1.0 1 23 491 514 491 514 0.90 8 12 0.68 76 5.7 5.0 2 23 523 544 522 544 0.97 9 12 7.9e-05 0.0088 18.1 0.2 1 23 550 572 550 572 0.97 10 12 0.0005 0.056 15.6 2.4 1 23 578 600 578 600 0.98 11 12 0.00059 0.065 15.3 8.8 1 23 606 628 606 628 0.98 12 12 0.002 0.23 13.6 0.5 1 22 634 655 634 655 0.96
Sequence Information
- Coding Sequence
- ATGCACAAGATAAATGATACCAACTGTTTAAAAGTTGTGGGACCTTGCTCTGTTACTCAGTATACTAAACCAATCCTTAAACTTCCCATATTTCAACTACCCAACTCTCAAATTGGACAACAAATGCAGAAAAAGGAATCTGGAGGCAGCTTATTAAAGAATATCGCAACTGATTCTTCCGTTCCTCAAAGTGAAACGAGTAGCTGGAACAAGTGTGCGCGCGAACCCgactttagcaattttaaatattggtgTGAAATCTGCGATGAGCGTTTCTGTTTCCCTAACATATTTCAAGATCATATAAATTTACATGTTCGTCTAAAACCTTACAAATGCGATCTGTGTAATAAACAATATGCTACCATGTTACATTTAAGCCAACACAAGGGAGATCATGCTGAAAACAGCattaaaatacgaaaaactTGGAAATGTCAAGTTTGTGGAAAACATTTTACAGCACCAAGCTTTCTCAAAAAACACATTGAAGGTACCCacgaaagaaaaaggaaaaaggaGTTATGTGAAATATGTGGAGTGGAATTCATTCGTGTGCAGGAACACGTTCGAAAGTGCCATGAGAAAACGTCTGTCGATGCGTGCATGCATAGTAGTCCATTGCAGTTAATCGATCCTGTCAACATCAAAAGCGAACTAGAAGAAACCGACTTGAAGAAaagcattaacaatcgttttcagCAAGCTATTGTCAAGGGTATACTGTCGCTCAAGCCGTTCgctaaaataagcaaaatcGAGCGTTCAAGTCGTACCGCAGCCGTAAAAACTTCTTTAAAACCGGTAGAAGAAATTAACTTTGTAACGGAAATTGAAATGAAGGAAGAACCATTGTACGAAGACAACACTTTGGAAGACTCCGACGTAGTGAATGCTGAAATTAAAACGATCACCAAACAAATTTTGCTAACCAAAAAGAACAAAATCAAGAAGTCCAGCAAAGCAGAAATAGGAAAAGCAATGTACTACTGCCATGTTTGTAACGACCACCAGAAGTTGACCAGAAATGAGCTAAAAGAACATTTTATGCGTCACGGTATGCCCGAGGCTGTTAATTCGCAATCACAATTTAAAAAGGCCCGAGCAAAACAAAATCGTGTTAAGAGACCATCGCCGCATAGATGTGAAGTTTGTTCTGAGCGCTTTTCGAATCAGAAGGAATTGTTTGAACACTTAGAGAGTCATCAAAATCAGTTCTTTTGCGATACCTGCAATGCTGGGTTTAAGACACTTATCGACCACACATGTCACGTTCAGGAGCACAGCGAGGACAAGCTTTTTAGGTGTCCGCTTTGTGAATTTACTGCTCACAGACGTTTTCAAATCAGAGCTCATTTGTATTCTCAACACGAGCAGTTCAAAAAGTACAAATGCGACATCTGTAACAAGGGTTATTCGGTTTACTCATATTTGGAAGAACATCAAAATtatcataccggcgaaaagccttttcaATGCGATTTATGTGGGCTCAGTTTTATGTACAAGCGGTACTTAAACGCACATAAAGTCCAAAGACATGCAAAAGTCGAGAAAAAGTCTTTAGAATGTCCGGTGTGCAAGAAAGTTTGTCTCAATAGAAGAAGGTATTGCAGCCACATAAAAACTCACGATAACGAAAAGAGCTTCGTATGTGACGTTTGCGGTAAGACTTTTGCAACTAACCAAGCAATAGCAACACACCGAAAACTTCACAGCGATAGTAGACCGTATAAGTGTAAGTTCTGTGACAGAAGTTTCAAACAGGGTAGTTCTAGAACCGATCACGAAAGAATCCATACGGGCGAGAAACCTCATAAATGTCCACATTGCGAAAAATGTTTCACGCAACGTACTAGTATGGTTCGTCATTCGCGTAGCCACACAGGAAACAGACCGTACACCTGCCATTTGTGTAAGAAAGGTTTTGTTGCAAAGTCTGTGCTTGTTAATCATTTAAAGACTTCTTGTGAAGGGGTAGTTCAATGA
- Protein Sequence
- MHKINDTNCLKVVGPCSVTQYTKPILKLPIFQLPNSQIGQQMQKKESGGSLLKNIATDSSVPQSETSSWNKCAREPDFSNFKYWCEICDERFCFPNIFQDHINLHVRLKPYKCDLCNKQYATMLHLSQHKGDHAENSIKIRKTWKCQVCGKHFTAPSFLKKHIEGTHERKRKKELCEICGVEFIRVQEHVRKCHEKTSVDACMHSSPLQLIDPVNIKSELEETDLKKSINNRFQQAIVKGILSLKPFAKISKIERSSRTAAVKTSLKPVEEINFVTEIEMKEEPLYEDNTLEDSDVVNAEIKTITKQILLTKKNKIKKSSKAEIGKAMYYCHVCNDHQKLTRNELKEHFMRHGMPEAVNSQSQFKKARAKQNRVKRPSPHRCEVCSERFSNQKELFEHLESHQNQFFCDTCNAGFKTLIDHTCHVQEHSEDKLFRCPLCEFTAHRRFQIRAHLYSQHEQFKKYKCDICNKGYSVYSYLEEHQNYHTGEKPFQCDLCGLSFMYKRYLNAHKVQRHAKVEKKSLECPVCKKVCLNRRRYCSHIKTHDNEKSFVCDVCGKTFATNQAIATHRKLHSDSRPYKCKFCDRSFKQGSSRTDHERIHTGEKPHKCPHCEKCFTQRTSMVRHSRSHTGNRPYTCHLCKKGFVAKSVLVNHLKTSCEGVVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -