Ccup011969.2
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284487.1:35145829-35161235[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.88 98 5.3 1.6 1 20 302 321 302 324 0.76 2 12 2.6 2.9e+02 3.8 5.1 1 19 415 433 415 438 0.89 3 12 0.0087 0.97 11.6 3.1 1 23 444 466 444 466 0.97 4 12 0.00022 0.024 16.7 0.4 1 23 474 497 474 497 0.92 5 12 2.7e-06 0.00031 22.7 4.6 1 23 503 525 503 525 0.98 6 12 0.012 1.3 11.2 0.7 1 20 531 550 531 553 0.93 7 12 5.4e-06 0.00061 21.7 2.2 1 23 559 581 559 581 0.98 8 12 2.5e-05 0.0028 19.6 0.4 1 23 587 609 587 609 0.98 9 12 8.6e-05 0.0096 18.0 7.6 1 23 615 637 615 637 0.98 10 12 4.8 5.4e+02 3.0 6.9 2 23 644 665 643 665 0.95 11 12 0.00034 0.038 16.1 1.1 1 23 671 693 671 693 0.98 12 12 4.6e-06 0.00051 22.0 3.5 1 23 699 721 699 721 0.98
Sequence Information
- Coding Sequence
- ATGGATGCTCCAAGGTTGTTGTGTGACTTGAATCTTTGTCGATTATGTgctgaagaaaacaaaaacagtacACGTTTATTTCCAGTTGACGAAAACGAACAAGATTTAAGCCAACTTGTGAATAAATATCTTCCTTTAAAggTGGAAAGGGATGGTAAATTTCCGATTGTAATATGTCCAGGTTGCAATATTCAATTGGAAGCCACAAAGCAGTTCCTAGATCTTATCATAGAAGGCCAAAACAAGCTTCGAGATCTTTTTCGTCTACAACAAGAGACCTTACGCAGACAGGAAAAGCAGCGACAACAACTAGACAGTGCTTTGAAAAATGTCAATCCAAATTCAAGTGTCGAAACTTATGCTATTCAAGCAGACGAAACTGGAGAGAAATTTATCATACAgatatTCTCAGATGGCCCGCTATTTCCACCAGAACATGAACTGTCATTGAAAACAGAAGGACTAGAAAGACCGAGGCGGAAACGGGGGAGACCTCCTAAACCGCCACCACCAACAGAGGAAGAATTAAAAGTACTTCAGgaagaagaattgaaaaataaacctGATCAAGAGGGGGATGATGATGGTGATATTGATGCTGATGGACGTCGTAGAAGGAAAATTAAAGTGCCTTCAAGATTTCAAGAAGCCGTCCAGGGAAAAGAATTGGACAGAATGTTTAAAGAAGAAGGTGTAATTGATGAGGATTCTTTATCGGAGGACGATGATGAAGTTGCAGTAGAAACGGTAATTTCCTCTAAAGGTGATGATGAAGTTATAGGTCATTTGCAAAGTAAGGAAGGAGAAGATTTGGGAGaacttgttattattaataaaaatactaatagATTGCACATAAAAACTAAAGAAGGTTCAAGCATTCCCaccataaaaaagaaaaagtatgAATGTGAAATTTGTGGAAGAGAGTTTTTACATTTTGGCCGTTATGAAGTCCATAAGTCTTTccataaaaatatgaaatataaatgcaATGAAGGGGACTGTAATGTGCACGATGAAACTAAGGCAGTTATTGAAGAGCACCAGAAGGAAACTGGGCATTCTGGAATTACAATATTTGAAAGTCTTGACAATTATGGTCAAGTGCAGTTACCACACTTGATAAATTCTTCTGAAAATGAAAGCAATGAAGAGATGGCACCTACGTTAGAAATTGCAAAAGAACTAATTGAAAATGAGCGTTCAAAGATTACAAGATTGTTAGATACCGAGAGCAAGTTCTCTTGTGAAATATGCAGCAAAAATTTTTCCTGCAAACAAAATTATGAAGTTCATTGTAAGGCGGTTCATGAAAATCAGCGTCCATACCAATGTGATAAATGCGAAAAATCATTTGCTTACGTAAATAGTCTCAAATGTCATATGCTGCAACATAgtgacaaaaatgaaaaattatatgcctgtgaaatttgcaaaaaaatcttcAATCATCCCAGTAGTTTAGTATACCATCGGGAAGCTGAGCATAACAATGGAAGACGTTTCGTTTGTAATAAATGTAACAAGAGTTTTAAACACAAGCAGCTATTGCAGCGCCATCAGTTGGTGCACTCGGATGAGAGGCCACATACTTGTAAAATGTGTATTGCAAGTTTTAAAACTagagcaaatttattaaatcataTGCCTATTCATACTGgggaaaagaaatattattgtaCACAATGCGGGCAATCTTTTGCTCACAAAACTTCACTTACACTTCATATTCGCTGGCACAGTGGTCAGAAACCATATGAATGCGATGTTTGTATGAAAACATTTTCTCAGAAGGGTAATTTAGCCGAACACAAACGGATTCACACAGGAGAAAAACCTTACTGTTGTGATCACTGTGGTCGCAAATTTACCACCTCATCTCAGTTTAAGTTGCATGTAAAAAGACATACAGGAGAAAGACCGTGGAGATGTGAATATTGTTCCAAAACATTCCTACATAAAGATACGTGGAAGTGTCATACACGaaggcatcgtaatgaaagacCTTATCAATGCCAACAGtGTTTTAGAGGCTTTACAGAACAATGGGCTCTAAAGAAACATGAACGACTTCATACAGGTGAAAAGCCGTATGTTTGCGATGTGTGCCATAAAGGTTTTGCAGACTGCTCGAACTtaacaaaacataaaagaatACATGGTAACATGAAATTCAATAAAACACCTACCAAGCCtcgaaatattaaatttatttcaacggCAGGTGAAGGTGCTAATGAAGTGTTGTATCTCACGTATCAAGATTCAAATTCAAATGATAGCCAGTTACAAACATTGGTACATATAGTGGATCCTTTGGATTGTGGAACAaatgaaactgaatctgaatcTTTGACAGACGACGTCTTTTTAACCTCATCGACTTTACCAGATTCGCTTGCACAGTTTCAGACAATGCAACAGGTTATAGATGAAGATGGTAGCGTTCTAAGTTTAACAACACTAGATGGGCAACAAATTAAAGTTATAACTACTATGGAGGAAGGTAATCAAACTATACAAGGTCTAATGCCCAATGGAGCAATAGTACCTCTAGGTCTTACTATACAAGAGGGTAAAACCGTTGTTTCTGAAGAAGCTaaaatgaaGAGTGAAAGTGAAACCTCTACTTCATCAGATGCTGAAAAGCAGTTATTAGACGATAACATACAACTTTTAAATGAGAATAACCACAAACTGGAAAACggtatacaatttttaactgaaGATGGGCAAAATATTTGCCTAGTTGCTACATACAATGATGAAAGTATTAATCCGCAATATTTAGCTATGGCATAA
- Protein Sequence
- MDAPRLLCDLNLCRLCAEENKNSTRLFPVDENEQDLSQLVNKYLPLKVERDGKFPIVICPGCNIQLEATKQFLDLIIEGQNKLRDLFRLQQETLRRQEKQRQQLDSALKNVNPNSSVETYAIQADETGEKFIIQIFSDGPLFPPEHELSLKTEGLERPRRKRGRPPKPPPPTEEELKVLQEEELKNKPDQEGDDDGDIDADGRRRRKIKVPSRFQEAVQGKELDRMFKEEGVIDEDSLSEDDDEVAVETVISSKGDDEVIGHLQSKEGEDLGELVIINKNTNRLHIKTKEGSSIPTIKKKKYECEICGREFLHFGRYEVHKSFHKNMKYKCNEGDCNVHDETKAVIEEHQKETGHSGITIFESLDNYGQVQLPHLINSSENESNEEMAPTLEIAKELIENERSKITRLLDTESKFSCEICSKNFSCKQNYEVHCKAVHENQRPYQCDKCEKSFAYVNSLKCHMLQHSDKNEKLYACEICKKIFNHPSSLVYHREAEHNNGRRFVCNKCNKSFKHKQLLQRHQLVHSDERPHTCKMCIASFKTRANLLNHMPIHTGEKKYYCTQCGQSFAHKTSLTLHIRWHSGQKPYECDVCMKTFSQKGNLAEHKRIHTGEKPYCCDHCGRKFTTSSQFKLHVKRHTGERPWRCEYCSKTFLHKDTWKCHTRRHRNERPYQCQQCFRGFTEQWALKKHERLHTGEKPYVCDVCHKGFADCSNLTKHKRIHGNMKFNKTPTKPRNIKFISTAGEGANEVLYLTYQDSNSNDSQLQTLVHIVDPLDCGTNETESESLTDDVFLTSSTLPDSLAQFQTMQQVIDEDGSVLSLTTLDGQQIKVITTMEEGNQTIQGLMPNGAIVPLGLTIQEGKTVVSEEAKMKSESETSTSSDAEKQLLDDNIQLLNENNHKLENGIQFLTEDGQNICLVATYNDESINPQYLAMA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00789668;
- 90% Identity
- -
- 80% Identity
- -