Basic Information

Insect: Ctenicera cuprea
Gene Symbol: -
Assembly: GCA_958336395.1
Location: OY284495.1:614286-616071[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.04 4.4 9.6 2.7 1 23 75 97 75 97 0.97

2 15 0.015 1.7 10.9 0.6 1 23 103 125 103 125 0.97

3 15 2.6 2.9e+02 3.8 0.0 11 23 143 156 134 156 0.90

4 15 0.0041 0.46 12.7 3.4 1 23 171 193 171 193 0.97

5 15 0.0017 0.19 13.9 1.4 1 23 199 221 199 221 0.98

6 15 0.00032 0.036 16.1 1.0 2 23 230 251 229 251 0.97

7 15 0.00073 0.081 15.0 0.5 1 23 257 279 257 279 0.99

8 15 0.0018 0.2 13.8 1.6 1 23 285 307 285 307 0.98

9 15 0.017 1.9 10.7 3.3 1 23 313 336 313 336 0.97

10 15 0.63 71 5.8 2.4 1 23 383 405 383 405 0.98

11 15 0.093 10 8.4 0.2 1 23 411 433 411 433 0.97

12 15 0.71 79 5.6 0.9 1 23 439 461 439 461 0.96

13 15 0.01 1.1 11.4 0.3 1 23 467 489 467 489 0.99

14 15 0.00024 0.026 16.6 4.8 1 23 495 517 495 517 0.99

15 15 5.5e-05 0.0061 18.6 3.1 1 23 523 545 523 545 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.04	4.4	9.6	2.7	1	23	75	97	75	97	0.97
2	15	0.015	1.7	10.9	0.6	1	23	103	125	103	125	0.97
3	15	2.6	2.9e+02	3.8	0.0	11	23	143	156	134	156	0.90
4	15	0.0041	0.46	12.7	3.4	1	23	171	193	171	193	0.97
5	15	0.0017	0.19	13.9	1.4	1	23	199	221	199	221	0.98
6	15	0.00032	0.036	16.1	1.0	2	23	230	251	229	251	0.97
7	15	0.00073	0.081	15.0	0.5	1	23	257	279	257	279	0.99
8	15	0.0018	0.2	13.8	1.6	1	23	285	307	285	307	0.98
9	15	0.017	1.9	10.7	3.3	1	23	313	336	313	336	0.97
10	15	0.63	71	5.8	2.4	1	23	383	405	383	405	0.98
11	15	0.093	10	8.4	0.2	1	23	411	433	411	433	0.97
12	15	0.71	79	5.6	0.9	1	23	439	461	439	461	0.96
13	15	0.01	1.1	11.4	0.3	1	23	467	489	467	489	0.99
14	15	0.00024	0.026	16.6	4.8	1	23	495	517	495	517	0.99
15	15	5.5e-05	0.0061	18.6	3.1	1	23	523	545	523	545	0.99

Sequence Information

Coding Sequence: ATGAATATAGAACTCAAAGACATTATATGTATACAAGAATTTAATGTCGAACCTCCAACGGAACCACaagTATATCCACAAAATACCAAGCCTGAAATCAAAGAAGAAGATGACATCGTTTTAGAGCCCTTATTGATATCAACAGAAACATTACAAGCATTGATGTCTGAAGAAGTGGACATAAAATACGAAATTCCCTCATCCACAAGTTCAAATGACATTTTCAGTTGTAAATTATgtgattttaaaacatattataaaaaaacccTAGCAAGTCATACATTAATGCACAATAAAGAAAGGCTGTACAAGTGTAATCAATGCGAGTATATGGCCGGAAGTAAACGTGAGTTAACACAACATAAAATGGCACATGATGATGGTGGAGAAAAGCTTTGCAAATGCAGTGAAGGTGATTACGACGCCACATCAAAGTTTAATTTACAAACACATACTATGACTGTCCATCCTAAAGAATTCAAAGCGACGAAGCCAAGTCGTCAGATATCGTACAAATGCAACTTTTGCAGTTACATAACGTCAAGGAAACGTGATTATCAAAAACACACAAACGCTCATGCTCGAGAAAACACGTTTAGTTGCAGTAAATGCGAGTACAAAACTATATCACAATTTAAACTTGAACGTCACATCATCAGCCATTTGAGGGACAAACGGCGGCGTTTAAAATGTGAAACGTGTGATTATCGAACGACAGCAAAACGTAATCTACTTCGTCACATATTAacacacactggagaaaagccattcaaaTGTACAGTATGTGACTATCAAACGGCTTCGGACACATATTTGGAAGTTCACATAAAAACTCACGCTAAAAATAAGCCATTTAAATGCCCTGAATGCAATTACAGCACTGTATGGAAGCACAGCCTTCGGCAACACTTAGCAACACATATTGAAGGAAACCcatttaaatgtcaaaaatgtGAATACAGCACGAGGTACATCCTTCATTTACAGGAACACATGAAAGAGTCTCACAAATCTAAATATAAACCATTGGAATATATTATGACATTGACACAAAACAACACAGAGTGTGGtatcatcaataatttaaaCAGTGAATTTCAAATCATCGAACAACTCACCCCTGAGGcacaaaagaaagaaaaaccttTCAAGTGTGAGCTTTGTGATTTTAGATCTGCTTGGAAATGTGCTGTGCGAACACACATGAAGACGCACGGTGGTGAAAAACAATTCAATTGCGAAATCTGTGGTTTCAGGACTATATGGAAACGGGTGCTACTTTGGCATATGAATACGCATAGTAAGGAAAAAGTTTACGAATGcgaattttgcaattttaaaagcacGTGGAAACGCTCATTAGAAACACATGTACTTttacacacaggagaaaaaccatatAAATGCAACGTGTGCGATTTTAGAACTGCCTGGAATCGGGCTTTAAACttacatatgaaaatacataccGGGGAGAAACGATTTCAGTGTACGGTGTGTAAATACAAGACTGCacataatagtaattttaaaaaacatgttatgACGCATACTGGGGAAAAGCCGTACGAGTGCGCTGTATGTGGCCATAGATCAGCACAGAAGAGTCATTTTCAAattcatatgaaaactcatgctGAACGGACTGAAACAATGATTTCAAATACCATTGAAGAAACTGAAAGCATAATTCTAAAAACTGAGGAtgatacagaatttttaaatggttaa
Protein Sequence: MNIELKDIICIQEFNVEPPTEPQVYPQNTKPEIKEEDDIVLEPLLISTETLQALMSEEVDIKYEIPSSTSSNDIFSCKLCDFKTYYKKTLASHTLMHNKERLYKCNQCEYMAGSKRELTQHKMAHDDGGEKLCKCSEGDYDATSKFNLQTHTMTVHPKEFKATKPSRQISYKCNFCSYITSRKRDYQKHTNAHARENTFSCSKCEYKTISQFKLERHIISHLRDKRRRLKCETCDYRTTAKRNLLRHILTHTGEKPFKCTVCDYQTASDTYLEVHIKTHAKNKPFKCPECNYSTVWKHSLRQHLATHIEGNPFKCQKCEYSTRYILHLQEHMKESHKSKYKPLEYIMTLTQNNTECGIINNLNSEFQIIEQLTPEAQKKEKPFKCELCDFRSAWKCAVRTHMKTHGGEKQFNCEICGFRTIWKRVLLWHMNTHSKEKVYECEFCNFKSTWKRSLETHVLLHTGEKPYKCNVCDFRTAWNRALNLHMKIHTGEKRFQCTVCKYKTAHNSNFKKHVMTHTGEKPYECAVCGHRSAQKSHFQIHMKTHAERTETMISNTIEETESIILKTEDDTEFLNG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -