Ccup051586.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- L
- Assembly
- GCA_958336395.1
- Location
- OY284496.1:7090784-7119225[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.4e-06 0.00026 22.9 0.5 1 23 83 105 83 105 0.97 2 13 0.058 6.5 9.0 3.3 3 23 113 133 111 133 0.97 3 13 1.7e-06 0.00019 23.3 5.3 1 23 139 161 139 161 0.99 4 13 0.00018 0.02 16.9 0.3 1 23 167 189 167 189 0.99 5 13 9.7e-05 0.011 17.8 0.3 1 23 203 226 203 226 0.97 6 13 0.00012 0.013 17.5 0.4 3 23 250 271 248 271 0.96 7 13 1.1 1.2e+02 5.1 0.1 1 20 314 333 314 334 0.93 8 13 0.0096 1.1 11.5 0.1 1 23 430 452 430 452 0.97 9 13 9.5e-05 0.011 17.8 0.0 2 23 467 488 467 488 0.97 10 13 2.2 2.5e+02 4.1 2.7 3 23 498 520 496 520 0.83 11 13 0.017 1.9 10.7 1.9 1 23 525 548 525 548 0.96 12 13 8.5 9.5e+02 2.2 1.0 1 23 555 578 555 578 0.83 13 13 1.4 1.5e+02 4.7 3.7 2 23 613 635 612 635 0.93
Sequence Information
- Coding Sequence
- ATGTTGTTTAAGGGTAACAGCAGCCGTTTGGAGTTGCTCATCGAAAAAATTCACACGAATAAAGAAACTACTGAAATTGGAGAATCAATTGCAgGCTCCATTGGAACCGAGCATGGAAGTTGGGGCTCTAATACCCCAGAGCAGGCTTCACCAGCACCTAGTTCTTGCCCAACCCCTAGTTCCAGCCTAAGCGACGTCGCTGAAGCAGAAATTGCGTTTACTTTAGGGGTTACAGAGAGCACACCTTATGCTTGTAAAATCTGTAACAAGGCTTTCGCCAGATCTTCCTTGCTAAGCAAACACGAACAGTCCCATACAGACCAACTGCAGTATGGTTGCTCGTATTGCCCCCGATTGTTCAAACACAAACGCTCCAGAGATCGACATATTAAGCTGCACACTGGAGACAAGAAGTATAAATGTGTTCATTGTCAAACGGCGTTTTCAAGAAGTGACCATTTGAAGATTCACATGAAGACGCACGATAACAGCAAACCATTTCGTTGTTTAGTGTGTACTCGAGGCTATAACACAGCGGCAGCACTCACTTCTCACCAACAAACGCATAACaagcaaaatatagaaaatagaCAGAGTCCAGAAAGTTTCAAGTGTCTCCAGTGCCCTGAAATTTTTAGTCGATACGATTTACTACAgATACATATATCTTCTAACCACAGTGGTATCGTGGGCAACTCTCCACAACACAATGTACCTGTAACGGTACAAGAAAATCCTACGTGGGCTTGCATGTATTGTGGTAAAGACTTTGTAACACGTCCAGAGATGCAGCATCATATTAACACAGAACATAATGCACTCCTAAATGGAGACTTTGCaggaaattcttcaaaaaatgtCACAACCACAGAAACGTTGTCACTTTCAAGCGATAAAGTTTCTACATCACACGATCACCAGCCTAACAGCTCACCAACATATGCCTGCGAAAGCTGTACGATGCAGTTTGATTCAATTGAAAAGTTAAGGGTGCACGAAAACTGTATCCATTGGAAACCTCCACAACCGTTGATGTCAAACCCAGCGTCATTTTTAAAGGACTGCAATACGGGCCTACCACCAACCCAAGGTATGAGCCCTGAAGTACTGAGCAACTCCCCCAATACGCAACCTGTTCAATCACAACCAACTGATTTAAGTCAAAAAAGACGAGGGGGTGATATAGAAGATCAAATCGCTCCGAAGAGAAACAACGTTGAAAGGAGCGCTTCTCAAGCCGTAGCAAGCAGTTCCcataattcttcaaaaaaagAAGAATGGTCCAGTTATATATGCAGTATATGTGGTACCCAGTTGCCAAGTTTTGGCTCTTTCATGGTACATATGGATATTCACATGTCTGTTAATGCAACTCCTGCTAATGTTGTATTGGGAGGTTACTGTCCTCTTTGTAATGAACCTTACAGAGACCAAGCTGAGCTCAACAATCACATTTTAATTCACACATTAAGTTACAAAACAGGCTGGTGCTGTCGTGTTTGCAAGAAAATGTTTAACGAGAACTTGGATGAGTTACAAAGACACTTAATGGAAACGCATGCTTGCACTACTTATAGATGCTGCGTGTGCCAACAGATGTTTGACAGTAAAGCTGCAATGTTGGTGCACTTGACGAAGAAGCACAGTCTTGAATGTCAGCATTACCGATGTAAATTTTGTCCAGAACAAATTTTCCACAATCAGATCAGTGCTGAGATGCACATATCTCAACATATACCACGTTTGTTTGATCCATCCCGTAAAACTACAGCTTTTGGACCGTTTCCATTCCGCAATGATTTCAACTCGAGGGTCGAAAGAATGGTTAAAAGCTTGCAATGTCCGTTTTGCCGCCAATGTTTCAAAGGAGAATATTTACATCAAATGCATATGATAAAAGAACATAATAGAGAGGTATGGGAACTATATTATCAAGGGTATCGTTACTATGCAGCATGA
- Protein Sequence
- MLFKGNSSRLELLIEKIHTNKETTEIGESIAGSIGTEHGSWGSNTPEQASPAPSSCPTPSSSLSDVAEAEIAFTLGVTESTPYACKICNKAFARSSLLSKHEQSHTDQLQYGCSYCPRLFKHKRSRDRHIKLHTGDKKYKCVHCQTAFSRSDHLKIHMKTHDNSKPFRCLVCTRGYNTAAALTSHQQTHNKQNIENRQSPESFKCLQCPEIFSRYDLLQIHISSNHSGIVGNSPQHNVPVTVQENPTWACMYCGKDFVTRPEMQHHINTEHNALLNGDFAGNSSKNVTTTETLSLSSDKVSTSHDHQPNSSPTYACESCTMQFDSIEKLRVHENCIHWKPPQPLMSNPASFLKDCNTGLPPTQGMSPEVLSNSPNTQPVQSQPTDLSQKRRGGDIEDQIAPKRNNVERSASQAVASSSHNSSKKEEWSSYICSICGTQLPSFGSFMVHMDIHMSVNATPANVVLGGYCPLCNEPYRDQAELNNHILIHTLSYKTGWCCRVCKKMFNENLDELQRHLMETHACTTYRCCVCQQMFDSKAAMLVHLTKKHSLECQHYRCKFCPEQIFHNQISAEMHISQHIPRLFDPSRKTTAFGPFPFRNDFNSRVERMVKSLQCPFCRQCFKGEYLHQMHMIKEHNREVWELYYQGYRYYAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -