Ccup047795.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ctenicera cuprea
Gene Symbol
-
Assembly
GCA_958336395.1
Location
OY284495.1:884385-890240[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0025 0.27 13.4 2.1 1 23 145 167 145 167 0.98
2 17 0.00021 0.023 16.7 0.9 1 23 185 207 185 207 0.99
3 17 0.0099 1.1 11.5 3.6 1 23 213 235 213 235 0.96
4 17 0.096 11 8.4 1.5 1 23 241 263 241 263 0.97
5 17 0.075 8.4 8.7 5.4 1 23 373 395 373 395 0.99
6 17 3.9e-05 0.0043 19.0 1.3 3 23 403 423 403 423 0.99
7 17 0.00014 0.015 17.3 1.4 1 23 429 451 429 451 0.99
8 17 0.024 2.7 10.2 3.6 1 23 457 479 457 479 0.97
9 17 2.1 2.4e+02 4.1 4.3 1 23 569 591 569 591 0.96
10 17 0.00048 0.054 15.6 1.3 1 23 597 619 597 619 0.98
11 17 1.8e-05 0.002 20.1 1.6 1 23 625 647 625 647 0.99
12 17 0.00085 0.095 14.8 0.3 1 23 653 675 653 675 0.97
13 17 0.0019 0.21 13.7 1.5 1 23 681 703 681 703 0.98
14 17 0.024 2.7 10.2 0.7 1 23 709 732 709 732 0.93
15 17 0.28 31 6.9 0.2 2 23 739 760 738 760 0.97
16 17 0.0046 0.51 12.5 3.8 1 23 766 788 766 788 0.98
17 17 0.11 13 8.1 4.4 2 23 795 817 794 817 0.95

Sequence Information

Coding Sequence
ATGGATAGTTTAGAAGCCGAAACCAACATTATAAAAAGTGATTTCTTTGAGCAGTGCCCCGAAGTGATCGATGACCTTTTAGATATTAAGGATGTTAAAATGGAATTTCCTGACACCAAAGtaaaaCAAGAAATTGACAAATATTCATCGCCTAAATTAGACTTTCCAAATCCAGACGTCAAATTTGAATATATCAACCTCCAATCGGAACCTTCTAAACAGTTTGATAACACAGAGGAAATTATTGATGCAACCACAACAGCACTCGGTTATAATCAGGATCCCTTTGGAGATTGCAAGTATACGATAACAAATGCATCTAATTTTGTAAACGAAATTTCCAAATcggattttgaagaaaaaagttATCAATGCGAATTAAAAACTGACAGCAATCAACTCGACAGGATACGACTTAAAGGGAAAAAGCCATTCAAATGCAATTTGTGTGGATATGCGTCTATGTACAAAAACTACTTTCAGCGGCATATGTATATTCATGGTAGTGAAAAGCCGCTTCAAAACCTTACAAAAAAACACGAAATAGAACAGTTTAAATGTGAAGTGTGCGGGTATGCAACCGACCAGAGAAGACATTTTGAAGTGCATGTTAGAATCCATAATGGAGAAAAACCTCATGCATGCAAgcaatgcaaatttaaaagtgcACACAAAGTAGATTTAACCCGACATATGATAATACATactggagagaaaccttttgcctgtaatttatgtgattatgcGTCTGCATGGAAACGATGTCTTTTTAGGCACATGAAAATTCACACTGAAGATAAACcatttaaatgtgaaaaattaaaacaagaaatcgaACCATATCAACCAAATCCAAACATCAAATGTGAATATATCAACATCAAGTCGGAACCTTTTGCACAGCTTCATAACGATGAGGAAATTATTGCTGCAACCACAACACATTCcgattataaaaatgtttgcatttcTACAACAACAAGTGATTGTAATATACCAAacaaatcaaaatcagatattaaagaaaaacgttATCGTTGCCAAGAATGTGAATTTGAAACTCATAGCAGGTCCAGTATTCGATCCCATAAAATATGTCACAAAGGCGAGAAGATATACAAATGTAATTCGTGCGAATATGCAGCCATGTTCAAAAAACATCTCCATCGGCACATGAAAATTCATAGTAGTGAAAAGCCGCTAGGATGCCAAGAATGTGAGTACACCACTGCAGATTCTTCTAACCTACGAAAACATATGAAGAAACATGGAGGTATAGAACCATTCAAATGTGAACTATGCGAATATGCAACCGCAAACAGTATACATTTTCAAGTGCATATGAGAACTCATAATGGGGAAAAGCTCCATAACTGCGAgcaatgcaaatttaaaactgcACATAAAGCAACTTTAATGGTACATCTGAGAgtacacactggagaaaaaccttttgcgTTAAAAGAAGAAATCGACACATATTCATTGCCTCAATCAGAACCTCCAAATCCAGAGGTTGAATTTGAATATATCGACGTTAAGTTGGAGCCTTCTGAACAGTTCCTTAATGAAGGGGAAATTAGTGATACAAACTCAACACCTGATTATGAACGGGACATAAAATACGACAATGACACAACAACCGATGCGtgtaatttagaaaaccaaaataatatttccaaatCGGACatcaaaagaaaactttttcattGCCAAGAATGTGAATTTAAAACCTACAACAGGTCGCTTATTCGAACCCACAAGATACGACATAAGggagaaaagccattcaaaTGCAATTTGTGTGGATACACAGCTATGTTCAAAGACTACCTCCAACGGCACATGTACATTCATAGTAGCGAAAAGCCTTTCCGATGCCAAGAATGTGAGTACATAACCGCAGATAAATCCAGTTTACGTAAACATATGAAAAAGCACAGTGGAAAAGAACCATTCAAATGTGAAGTTTGCGGATATTCAACTTTCAACGGTgcacatttacaaatacatatggcagctcATAGTGGTGAAAAACCTCATGTATGCCAGCAATGCGAATTTAAAACTGCATATAAAGCAGCATTAACCCTACATATGAGAACACACACTGGAGAGAAACCTTTCGCCTGTGATTTATGTGACTATGCTGCCGCAAGGAAAAAAACTCTCTTGGTTCATCATCAAAGAACTCACACTAAAGCGAAACCTTCTGAATGCAGTGAGTGTGACTATAGAAACGTAGATGAAGTTCTATTACGAATGCATGTGAAAACGCACGTAAAAGATATGCCATTTCAATGCAAGGAATGTTTGTATAAAACTGACCGAAGTTATCGTTTAAAAAGACACATGCAATATCACACGGAAGAAAATCCTCTGCATTGCACAAAATGttcatttaaaactaaaaccaGAACTCAATTAACTATTCATATTACAAAGCTTcactag
Protein Sequence
MDSLEAETNIIKSDFFEQCPEVIDDLLDIKDVKMEFPDTKVKQEIDKYSSPKLDFPNPDVKFEYINLQSEPSKQFDNTEEIIDATTTALGYNQDPFGDCKYTITNASNFVNEISKSDFEEKSYQCELKTDSNQLDRIRLKGKKPFKCNLCGYASMYKNYFQRHMYIHGSEKPLQNLTKKHEIEQFKCEVCGYATDQRRHFEVHVRIHNGEKPHACKQCKFKSAHKVDLTRHMIIHTGEKPFACNLCDYASAWKRCLFRHMKIHTEDKPFKCEKLKQEIEPYQPNPNIKCEYINIKSEPFAQLHNDEEIIAATTTHSDYKNVCISTTTSDCNIPNKSKSDIKEKRYRCQECEFETHSRSSIRSHKICHKGEKIYKCNSCEYAAMFKKHLHRHMKIHSSEKPLGCQECEYTTADSSNLRKHMKKHGGIEPFKCELCEYATANSIHFQVHMRTHNGEKLHNCEQCKFKTAHKATLMVHLRVHTGEKPFALKEEIDTYSLPQSEPPNPEVEFEYIDVKLEPSEQFLNEGEISDTNSTPDYERDIKYDNDTTTDACNLENQNNISKSDIKRKLFHCQECEFKTYNRSLIRTHKIRHKGEKPFKCNLCGYTAMFKDYLQRHMYIHSSEKPFRCQECEYITADKSSLRKHMKKHSGKEPFKCEVCGYSTFNGAHLQIHMAAHSGEKPHVCQQCEFKTAYKAALTLHMRTHTGEKPFACDLCDYAAARKKTLLVHHQRTHTKAKPSECSECDYRNVDEVLLRMHVKTHVKDMPFQCKECLYKTDRSYRLKRHMQYHTEENPLHCTKCSFKTKTRTQLTIHITKLH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-