Ccup041340.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ctenicera cuprea
Gene Symbol
-
Assembly
GCA_958336395.1
Location
OY284493.1:19616167-19618284[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.007 0.77 12.0 3.0 1 23 159 181 159 181 0.99
2 17 0.0055 0.61 12.3 3.2 1 23 187 209 187 210 0.96
3 17 0.00027 0.031 16.4 0.3 1 23 216 238 216 238 0.99
4 17 0.013 1.5 11.1 0.8 1 23 244 267 244 267 0.98
5 17 0.026 2.9 10.1 0.7 1 23 273 295 273 295 0.96
6 17 0.00083 0.092 14.9 2.2 1 23 309 331 309 331 0.98
7 17 0.0023 0.25 13.5 4.7 1 23 366 388 366 389 0.96
8 17 0.006 0.66 12.2 0.4 1 23 395 417 395 417 0.98
9 17 0.033 3.7 9.8 3.3 1 23 423 446 423 446 0.97
10 17 0.19 21 7.4 0.5 1 23 452 474 452 474 0.96
11 17 0.1 11 8.3 1.9 1 23 480 503 480 503 0.91
12 17 0.00077 0.086 15.0 0.7 1 23 531 553 531 553 0.99
13 17 0.006 0.67 12.1 1.7 1 23 562 584 562 584 0.98
14 17 1.6e-05 0.0018 20.2 2.0 1 23 590 612 590 612 0.99
15 17 0.00015 0.017 17.2 0.8 1 23 618 640 618 640 0.99
16 17 0.0065 0.72 12.1 1.8 1 23 646 668 646 668 0.99
17 17 0.043 4.8 9.5 2.3 3 23 676 696 674 696 0.98

Sequence Information

Coding Sequence
ATGGATAGTAACAAACAAGTTGCAATTAAAGTTGAATTAGATCGAGAAAATCATCACATTGTTTTCAATTCGAATTCGTCTTCATTACAAGAAAATTGTACAGTTTTAAAGCCAATTGAAGAGTTATTTTTAAGTCCCATCGATGAAGcccaaaaattcatcaaaaaagtATCGGCAAGTaatgaagttaattttaatatagatCTGTTTGAATCCAATGCAGCCGAATGcaacattaaattcaaaaatgaatcCCAGATTTTGGATGCAGCGAATGAGGGAACTATAttacgctcatttttatttcctgATAATTATACAGAAGACCTATTCAAATCAGAAAGTGAAGTGGAGCAAGAAGCACCGGTAAATCTGATGCCCATCGAAAAGCTACacataaaagaagaaattttaagCGATAACAATGTTTTGCTCGTAAAAACCCACAATGCAACACCAACAGAATATAGGATTTTCCAATGCACCCAATGCACATACAAAGCCAGCAAAAGACGTTACTTAGTCCAACACATGAAATCACACAATAGGGCAAAACCTTACAAATGTTCCCAATGTGATTACAGGGCAAAAGTGAAGACATCCCTCAACCGCCATGTGCTTTATCATCACACCAATAAAAGGCCTTTTAAATGTTCTCAATGCCCTTATGCTGGAATAAATAGTTGGAAGTTAAAAATTCATATGAGAAGTCACAGCGGGGAAAAACCATACAAATGTAAGCAGTGCAATTATCGAGCAACAGCTCGTTATTTAGTTATAAATCATCTCCGGACAGTACACACGGGAGAGAGGTGTTTTAAGTGCGACCAATGTGACTTTAGGGCTTTAATGAACAGTCAGTTAAAAGCTCATATAAAAATGCACAAGAATGAGTTGCCACATGACAATTTACCTAAAATATTATTCGAATGTGACAAGTGTGATTATAGCACTCGTTATGTAGAGCTGTTTAAAAACCATCAGAAGACACATAATGATGGCAGTTACTTTCACTGCACGGATTGTGAATACAAAGCTGTTTGTCGGCGTCACTTAATACACCACAGGAAAAAAATTCATGGTGAAAACAAACCGTATAAATGTAGTGAGTGCGATTATAgtgctaaaactaaaaattgcctGAATAGTCACATTCTAAACCACCACACAACAGAAAGGCCGTTTAAGTGTCTTCAGTGCCCTTTTGCAGGCGTAAGCAACTCAAGATTACGGGAACACATGAAAAGCCATAATGGAGGCAAGCCGCACAAATGTACCCAGTGTGATTATACGGCTAAAAAGCCATATGAAGTTACAAACCACTTCAGGAGAATGCACAGTGGCGAAAGGCcttataaatgtattttgtgTGAGCATACAGCTGCCACTAACAGCGATATAAAGATACATATGGAAACCCACACCAACGTTAAGTGCTTTAAATGTGACCAGTGCGAATATGAAACATCCCATAAGCGTGTTTTAAAGCAACATGTTGTGAATATGCATAGTGGGGAAGGGGCTTGTAAGTGCGGTGAACTTTCAAATGGTgctttagaagtaataatacaTACCTGTAAAAAGAAATCGTTTAAGTGTCCAGATTGTGATTATAATACTGTAAACATACAGAGCTTTCGGAGTCACATCACAACTCACACAAGAGGAATGGACGTTAAACAATTCCAGTgccatttttgcaattttgctgcaaagcaaaatagtaaattattatCACACTTAGCAGTACACTCGACCGAAAAACCTTTCAAGTGCACCGAGTGCGATCATAGAACTGCATATAAAAGTGCCTTAGTGAAGCATATGAGGGTGCACACTGGGGAAAAGCCTTACAAGTGTACACAATGTGATTATAGTGCTTCGCAAAGGAATGGACTGATGCAACACTTGATGACGCACACAGgggaaaagccttttaaatgttcTCTTTGTGATTACAGCGCTTCTTTGAAACATACCTTGGATTTGCATATGAAGGTGCATTCAGATGAAAAACCATATGGTTGTAACGAGTGCAGTTACAAGTGTAAAATTAAACAGGTTTTGATTAAACACATGCAAACGCATActaagaaaaaagtatttaagtTGCAGTGA
Protein Sequence
MDSNKQVAIKVELDRENHHIVFNSNSSSLQENCTVLKPIEELFLSPIDEAQKFIKKVSASNEVNFNIDLFESNAAECNIKFKNESQILDAANEGTILRSFLFPDNYTEDLFKSESEVEQEAPVNLMPIEKLHIKEEILSDNNVLLVKTHNATPTEYRIFQCTQCTYKASKRRYLVQHMKSHNRAKPYKCSQCDYRAKVKTSLNRHVLYHHTNKRPFKCSQCPYAGINSWKLKIHMRSHSGEKPYKCKQCNYRATARYLVINHLRTVHTGERCFKCDQCDFRALMNSQLKAHIKMHKNELPHDNLPKILFECDKCDYSTRYVELFKNHQKTHNDGSYFHCTDCEYKAVCRRHLIHHRKKIHGENKPYKCSECDYSAKTKNCLNSHILNHHTTERPFKCLQCPFAGVSNSRLREHMKSHNGGKPHKCTQCDYTAKKPYEVTNHFRRMHSGERPYKCILCEHTAATNSDIKIHMETHTNVKCFKCDQCEYETSHKRVLKQHVVNMHSGEGACKCGELSNGALEVIIHTCKKKSFKCPDCDYNTVNIQSFRSHITTHTRGMDVKQFQCHFCNFAAKQNSKLLSHLAVHSTEKPFKCTECDHRTAYKSALVKHMRVHTGEKPYKCTQCDYSASQRNGLMQHLMTHTGEKPFKCSLCDYSASLKHTLDLHMKVHSDEKPYGCNECSYKCKIKQVLIKHMQTHTKKKVFKLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-