Ccup022971.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284489.1:30675292-30680165[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.58 65 5.9 0.0 3 20 35 52 33 54 0.89 2 13 0.36 40 6.6 5.7 1 19 310 328 310 330 0.88 3 13 0.00074 0.082 15.0 3.8 2 23 342 363 341 363 0.98 4 13 2.7e-05 0.003 19.6 1.4 1 23 378 400 378 400 0.98 5 13 1.5 1.6e+02 4.6 1.0 1 14 431 443 431 452 0.74 6 13 3e-05 0.0033 19.4 1.2 1 23 458 480 458 480 0.97 7 13 0.002 0.22 13.7 0.5 1 21 486 506 486 507 0.95 8 13 5.9e-05 0.0066 18.5 1.5 1 23 514 536 514 536 0.98 9 13 1.5e-06 0.00017 23.5 2.9 1 23 542 564 542 564 0.98 10 13 0.0018 0.2 13.8 7.4 1 23 570 592 570 592 0.99 11 13 0.00011 0.012 17.6 0.5 1 23 598 620 598 620 0.98 12 13 2.5e-05 0.0028 19.6 0.2 1 23 624 646 624 646 0.98 13 13 0.00018 0.02 17.0 0.1 1 23 654 677 654 677 0.97
Sequence Information
- Coding Sequence
- ATGGGTACTCTCGAATTGGATTGTCCACTTTGTTGTAGCGAAACATTTCCATGCcacaattctttaaaatatcaCTTGTTGAGTATATCCGATAATCTAATCTGTTCAGCATGTGGAAAGAGATTCGAAAAAATAATTGATCTTGCTATGCACTTAGGCAGGCAATGTCTTGATCCAGAACGTGAAATAACAAATACAGAGGTGTTAATTGAAAATTCTGATACAAATATTGTACAGAGCAATAGTAATCGGGGAAGAAATCCATATTTATCTGAAAAGAATGTGTCTGCTACCGAAGTAGGGATAAAAGAGGAAGGCACTGTAAATGAAACAGAATTAGGAACTATAGTAACAAACAGTATATTGGCAAAAGCACTAATGAAAAATGCTGTAGCAGAAAAATCAGATAGTAATGAAATCACAGAAAACACCACGTTAGAAGATGAAGCAATAAGCAGGGACCAGGCTTCTGAAGAAGACGTGTATTATTGTTCTAGTTGCGCTATTAGTTTTACATCTATTGAGGATCATCTTCAAGAATTTCATGAAGGACATGAAGTTTTTGTTGAGgAGGAAGAAACAATGAATGCATCATTGGACAATAGCCCCCTACCAATAATTGATGAGGAAcacgatgatgatgatgaagatgAGTGTGATAATGATGATGCAGAAATATTGTGTGCTGCAGAACTCCTCGATACAGTTCAAGAAGAAGAATGTGTAGACAAGGATGGTCGTTTGTATATTCgtaaagttgtaaaaattgaaaagttttgggATGACAAggatattaaaactaaaaattcaaatgaagaaaattcaattgttacaataaaaaacaatacgtTTCAAGAAACTATTCTTCTGGAGAATATACAAGGTTTatcaaataattctaaaaataaggAAGATTTGTTGGAGATTTATCAGTGCTCAAAATgtgaaaagaaattttcaacgcTGGAACATTCTTCTAAACACAAATGTCCTGCTTTACGAGTGGATAGCAACAAATATAAAAAGTGTAAGATATGCAAAACTCATTTTGTTAGTTCAAAGTTTCTGTCTgcacatatgaaaattcataaacCTAAAACTTCTTCAGCGATTCCAGACCCAAACCCTCcatttatttgtgaaatttgcaaCACGGAATTTTCTACATATAAATCACTGCGTTTACATAGACGAATGCATGAACCAATAAAATCCAAAGATATTGAACCACCAGTTACATACGGAATACTGGGCGAAGAACTTGGGACAGAAGATGTACCTCAGGAAATGTTTATCTGTCAAatatGCAATAAACCATACAACAAAGAATATGAAGAAGCTCATAAGAAATTTCATAGCAAAGATATAGACTTTAACTGTGACATATGTAACCGGAAGTTTTTTACACGAGAGAATTTAGACATGCATATGCGTGCTCATTCAGATACAAAAAAGTTTACATGTTCCTACTGTAAAAAAGGCTTTTTAACCAATGAAAAGTTAGAAGCTCATATGTcaagtaaatgtcaaaaacgACAATATGAATGCCAGTATTGTGGAAGACGTTTTGCTCGACCCCATGAAAAAGTCAAACATGAAagaattcatactggtgaaaaaccacaTGTATGTGAAATTTGCGGTAAGGCATTTCGTGTAAGTTATTGTCTAACACTTCATATGCGTACTCATTCTGGTACAAGACCATATAAATGTGATCATTGTGGGAAAAGATTTAAAGCCCATAGTGTTTACAATCATCATCTACTAACTCACTCGGATGATCGTAAATACAAATGTCCATTTTGtccaaaaacattcaaaacagGTGTTCAGTTAGCAGGACACAAAAATAGTCACACGAAACCATTTACATGTACTGAGTGTAATCGGCCTTTTGCTTCTCTATATGCTGTGAGAGCTCACATGGAAACCCATCAAAGACAGAATAATTTAAAGTATAGGTGTTGGTTATGTGGAGCATCGTATGCAAGAGCGTTTGCACTACGTGATCATATCAGGGAACAGCATGTAGGTGAACACGATAATAATACAGAGGCTGATGCCATAATACTTGAAACTGATGATTATTCAATGACTGAAAATGTAGAGCCAAATACACCTATTTTAGCAGATGGTGATGAAAGTATGTTAATTGATATTGGTAGTGAAGTTGTTGATAATATGGAAATTCCAGATGTTCAAGTAGAACCAGACTTACAAGATAATGGTGgtacttga
- Protein Sequence
- MGTLELDCPLCCSETFPCHNSLKYHLLSISDNLICSACGKRFEKIIDLAMHLGRQCLDPEREITNTEVLIENSDTNIVQSNSNRGRNPYLSEKNVSATEVGIKEEGTVNETELGTIVTNSILAKALMKNAVAEKSDSNEITENTTLEDEAISRDQASEEDVYYCSSCAISFTSIEDHLQEFHEGHEVFVEEEETMNASLDNSPLPIIDEEHDDDDEDECDNDDAEILCAAELLDTVQEEECVDKDGRLYIRKVVKIEKFWDDKDIKTKNSNEENSIVTIKNNTFQETILLENIQGLSNNSKNKEDLLEIYQCSKCEKKFSTLEHSSKHKCPALRVDSNKYKKCKICKTHFVSSKFLSAHMKIHKPKTSSAIPDPNPPFICEICNTEFSTYKSLRLHRRMHEPIKSKDIEPPVTYGILGEELGTEDVPQEMFICQICNKPYNKEYEEAHKKFHSKDIDFNCDICNRKFFTRENLDMHMRAHSDTKKFTCSYCKKGFLTNEKLEAHMSSKCQKRQYECQYCGRRFARPHEKVKHERIHTGEKPHVCEICGKAFRVSYCLTLHMRTHSGTRPYKCDHCGKRFKAHSVYNHHLLTHSDDRKYKCPFCPKTFKTGVQLAGHKNSHTKPFTCTECNRPFASLYAVRAHMETHQRQNNLKYRCWLCGASYARAFALRDHIREQHVGEHDNNTEADAIILETDDYSMTENVEPNTPILADGDESMLIDIGSEVVDNMEIPDVQVEPDLQDNGGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -