Ccup047796.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284495.1:894077-897662[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.4 1.6e+02 4.7 5.8 1 23 118 140 118 140 0.97 2 19 0.0098 1.1 11.5 0.6 1 23 146 168 146 168 0.98 3 19 0.0037 0.41 12.8 1.1 2 23 175 196 174 196 0.97 4 19 0.00045 0.05 15.7 2.8 1 23 202 224 202 224 0.98 5 19 0.0074 0.83 11.9 1.6 1 23 230 252 230 252 0.96 6 19 0.0027 0.3 13.2 5.1 1 23 258 280 258 280 0.99 7 19 0.00026 0.029 16.4 0.7 1 23 412 434 412 434 0.99 8 19 4.3e-05 0.0048 18.9 1.4 2 23 441 462 440 462 0.97 9 19 6e-05 0.0067 18.4 1.3 1 23 468 490 468 490 0.98 10 19 0.0012 0.13 14.4 1.4 1 23 496 518 496 518 0.96 11 19 0.00021 0.024 16.7 1.0 1 23 524 546 524 546 0.97 12 19 0.0088 0.98 11.6 5.8 2 23 712 733 711 733 0.97 13 19 0.005 0.56 12.4 3.8 1 23 739 761 739 761 0.97 14 19 0.0097 1.1 11.5 1.5 1 23 767 789 767 789 0.96 15 19 0.0049 0.55 12.4 0.3 1 23 795 817 795 817 0.97 16 19 0.0018 0.21 13.8 0.4 1 23 823 845 823 845 0.97 17 19 0.0029 0.32 13.2 3.4 2 23 852 873 851 873 0.97 18 19 0.035 3.9 9.7 5.5 1 20 879 898 879 901 0.95 19 19 2.5 2.8e+02 3.9 6.5 1 23 907 929 907 930 0.94
Sequence Information
- Coding Sequence
- ATGAATATTTCAGAAGAAGAAACCGACAATATAAAAACTGGCTCCTGCCAGCAGTTACAAGTTTCAAATAGCTTTTTAGAAGTTAAAGATAATCAATTAGCAGTTTCTAAAGTTGCAGTGAAACAAGAAATCGACACATATTCATTGCCTCAATCAGAACTTCCAAATACAGAGGTCGAATTTGAATATATCAGTATCAAGGCGGAGCCCTCTGAACAGTTTCGTAATGAAGAGGAAATTATTGGTGCAACCACAACACCTCTCAATTATAAACAGGACCCCCTCAGCGGTTGCAATTATACGACCACAAACAAAACAGAaggtttcaaaacaaatttgaaagaaaaacgtTATCATTGTCAAGAATGTGATTTTAAAACTCATAACAGATCCAGTATTCGATCCCACAGGATATCCCATAAAGGGGAACGGTTATTCAAATGCAACTTGTGCGATTATGCAGCTGTGTTCAAAAAATACCTTGACCGTCATGTGTTAACTCATAGTAGTGAAAAACCACTTCAGTGCGAACAATGTTCATACAAAACTGCAATTATATCCAATCTACGGAAACATATGAAAAAACACGGGGGAAACGAATCGTTCAGATGTGAACTCTGCTCGTATGCAACTTTTAACAGTTCACATTTTCAAGTGCATATGAGAATTCATAATGGAGAAAAACCTCATGCATGTCAGCAATGCAAATATAAAACTGCACATAAAGGAGCTTTAATTGCACATATGACAATACACACTGGAGAGAAACCATTTACCTGTCATTTGTGTGCTTACGCATCTAGGAGAAAACAACATCTCTTGCGGCATGTAAGAACTCACACGGGAGAGACATCTCGTGAATGCCAAGGAGAAACCAACAGTATAAAAGATGATTGCGTTGAGCAGCGCTTACAAGTCGCTGATGATTTTGTCGACgttaaagatattaaaatagaaTCTTCTAAAAGTGAAGtagaaCAAGAATTCAACACATCTTCGTCGTCTCAGTTTGAAATTCCAAATTTAGATGTCGAATTGGATCATATCAATATTAAGTCGGAGCCTTCTGATTCGTGTGTTAATGAGGAGGAAAATATTTCTGCAAGCACACCAATTAACTGTAAACAGGATTCCCTTGCTGATTCCAATTATATAATAACAGATGTATCtagtttaataaagaaaaagtccAAAATTCGATCACGCAAGATACAACACAAAGGAGAAAAGACATTTAAATGCAGTTTGTGCGGATATGCAGCTATGTTCAAAGACTACCTCCAGCGACACATGAAAATTCATAGTAGTGAAAAACCACTGCGATGCCAAGAATGTGAGTATACAACTGCAGATACATCTAATCTACGAAAACATATGAAAAAACACATGGGAATAGAACCGTTTAAATGTGAAGTGTGCACGTATGCAACTGCTAACAGTTCACATTTTCAAGTGCACATGAGAGCCCATAATGGGGAAAAACCGCATGCATGCCAGCAATGCGATTTTAAAACTGCGTATAAAGCAGCTTTAACCCTGCATATGAGAACACACACTGGAGAGAAACCTTTCGCCTGTGATTTATGTGACTATACTGCTGCAAGGAAAGAACATCTCATGAATCATTTAAAAACTCATACCGACGACAAACCCTTTGAATGTCACAAATGTGACTATAGAAGAGTAAAATTTAACAGTACCCATATGGATACTTTAGCAGAGGAAATCAGTGAGGTAAAAAGGAATTTCTATGAGCGATGCTCACAAGTTGCCGATGGCACTTTAGAtattaaagatattaaaatagaatttacTGAAAGTGCAGtaaaacaagaaattaataCACATTCATCATGTCGATTTGAACAACCAAATCGAAACGTCAAATTTGAATATATCAACATCAAATCGGAACCTTCTGAACAGCTTGATAGTAAAGCGGAAATACAAGACCCCTTAGACGAATGCAGCAATACGAAAACAGACTCgagtaatttagaaaataaaaataaagttcccAGCAgatcaaatttaaaagaaaaacgataTCACTGCCAAGAATGTGAATTTAAAACTCATAACAAATCCAGTATTGATCACCACTTGTTAACTCATAGTAGTGAAAAGCCGCTTCGATGCCACGAATGTGAATATACAACGGCAATTAAATGCAATCTACGGAAACATATGAAAAAACACAGTCAAAACAAACCATTCAAATGTAAAATGTGCACATATGCAACTTTTACAAGTTCACATTTTCAAGTGCATATGACAGCTCATAATGGTGAAAAACCTCATGCATGTCAGCAATGCGAATTTAAAACTGCATATAAAGGAGCATTAACgttacatatgaaaacgcacactggagagaaaccttttGCCTGCACTTTATGTGACTATGCTGCTGCAAGGAAAGTACGTCTTTCGTATCATATGAGAACTCACACTGGAGAGAAACCTTTCGCCTGTGATTTGTGCGACTATGCTGCTGCAAAGAAAGATCATCTCTTGAATCACATAAAAAGTCACACTAAAGACGAACCTTTGGAATGTTGCGAGTGTGACTATAAAAGTGTAGATAAGATTCATTTACAAATGCACATGAAAACGCATTTGAAAGATATGCCATTCGAGTGTAAGgaatgtttatataaaactgATCGTAGTTATCATTTAAAAAGACACATGATATGTCACACAGAAGAAAAACCTCATCATTGCCCAAAATGTTCATTCAAAGCTAAAGCCAGAACTCAATTAACTCTTCATATTAGACAGCAccattag
- Protein Sequence
- MNISEEETDNIKTGSCQQLQVSNSFLEVKDNQLAVSKVAVKQEIDTYSLPQSELPNTEVEFEYISIKAEPSEQFRNEEEIIGATTTPLNYKQDPLSGCNYTTTNKTEGFKTNLKEKRYHCQECDFKTHNRSSIRSHRISHKGERLFKCNLCDYAAVFKKYLDRHVLTHSSEKPLQCEQCSYKTAIISNLRKHMKKHGGNESFRCELCSYATFNSSHFQVHMRIHNGEKPHACQQCKYKTAHKGALIAHMTIHTGEKPFTCHLCAYASRRKQHLLRHVRTHTGETSRECQGETNSIKDDCVEQRLQVADDFVDVKDIKIESSKSEVEQEFNTSSSSQFEIPNLDVELDHINIKSEPSDSCVNEEENISASTPINCKQDSLADSNYIITDVSSLIKKKSKIRSRKIQHKGEKTFKCSLCGYAAMFKDYLQRHMKIHSSEKPLRCQECEYTTADTSNLRKHMKKHMGIEPFKCEVCTYATANSSHFQVHMRAHNGEKPHACQQCDFKTAYKAALTLHMRTHTGEKPFACDLCDYTAARKEHLMNHLKTHTDDKPFECHKCDYRRVKFNSTHMDTLAEEISEVKRNFYERCSQVADGTLDIKDIKIEFTESAVKQEINTHSSCRFEQPNRNVKFEYINIKSEPSEQLDSKAEIQDPLDECSNTKTDSSNLENKNKVPSRSNLKEKRYHCQECEFKTHNKSSIDHHLLTHSSEKPLRCHECEYTTAIKCNLRKHMKKHSQNKPFKCKMCTYATFTSSHFQVHMTAHNGEKPHACQQCEFKTAYKGALTLHMKTHTGEKPFACTLCDYAAARKVRLSYHMRTHTGEKPFACDLCDYAAAKKDHLLNHIKSHTKDEPLECCECDYKSVDKIHLQMHMKTHLKDMPFECKECLYKTDRSYHLKRHMICHTEEKPHHCPKCSFKAKARTQLTLHIRQHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -