Ccup040799.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284493.1:14267345-14268571[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00051 0.057 15.5 2.4 1 23 13 36 13 36 0.97 2 14 0.00066 0.073 15.2 4.1 1 23 42 64 42 64 0.98 3 14 1.2e-05 0.0013 20.7 0.9 1 23 70 93 70 93 0.98 4 14 0.00084 0.093 14.9 4.4 1 23 99 121 99 121 0.99 5 14 0.00029 0.032 16.3 0.4 1 23 127 149 127 149 0.97 6 14 0.0001 0.012 17.7 0.3 1 23 155 178 155 178 0.98 7 14 0.0089 0.99 11.6 1.8 1 23 184 206 184 206 0.99 8 14 0.00018 0.02 17.0 3.8 1 23 212 235 212 235 0.98 9 14 0.54 60 6.0 0.3 2 23 242 264 241 264 0.92 10 14 0.00074 0.083 15.0 5.5 1 23 269 291 269 291 0.97 11 14 0.0047 0.53 12.5 0.5 1 23 297 320 297 320 0.98 12 14 0.00084 0.093 14.8 4.7 1 23 326 348 326 348 0.98 13 14 0.00059 0.066 15.3 1.8 1 23 354 377 354 377 0.97 14 14 0.073 8.1 8.7 3.3 1 23 383 405 383 405 0.96
Sequence Information
- Coding Sequence
- ATGCATATTAAAGCCGCACATCCTATAGAAAAACCTTTCGAATGTAATCACTGTAACTATGCCACTGCAAGTAAAAGCTATTTAGCAACACACTTCAAAAAGGTTCACTCTGGTATAAAACCTCACAAATGCAACTTTTGCAATTACAGCACgcaaaacaaaagtaatttatccATGCATTTGATTACCCACACTGGGGAAAAGCCTTATAAATGTACGCGATGTGATTACAGCTCAAAACAACCTAGTTTGTTGAAAAATCACATATTAATGATGCACACTAATGAAAGGCCTTACAAATGCACCCATTGCAGTTATGGCACAACAACATCGGCTCGTTTAAAAACGCATATAAAGAAGCACACTGGGGAACGTCCTTATAAATGCCCTGAATGTGACTTTAGTGCCATTAAAAATTACGACTTAAAAAAACACAGCTTGGTTCATACTACAGAAAAGCCATACAAATGTACTGAATGTAATTACGCAGCAAATCAAATGAAATTATTGAGAGCGCACATTAGGACCGTTCATATTGgtgaaagacctttcaaatgtagtCAGTGTACTTACGACACCATAAAGAAAAAACGGCTTGAAATCCATATACAAACACATACTGTAGAAAAATCGTATAAGTGTAGTCAATGTAATTATCATACGGTGAAATCGGACTTGTTGAAGAAGCACATGAAAAGTGTCCATAGTTCAGAGACTCTTTTAAAGTGCACCCAGTGCAGTTATGTAGCAAAAAAGGCACGAAGTATGAAATTGCATGTAATACAAATTCACAACAGCAAGCGTTGTAAATGTACTGAGTGCGATTTTAGCACGACTTCTAGGAAAGATTTCAACAAACACTTACAAACACACACCGatgttaaattatacaaatgctCGGAATGTTATTATATCGGAACAAAATTGAGATGGTTGACAGAACATATTAAAACTGTTCATACTACTGAAAAACAATTCAATTGTACCTATTGTGATTATAATACTTCTAGAAGTGCTAATTTAAGGTGTCATATGAAGACTCATACTGATGAAAATGCCCATAAGTGCACCGAATGCGATTACAGTGCAAGATTGTTGTCTTCTTTGAAAAATCATATAAGTACAAACCATGCGGATGAAAAACCCTTCAAGTGTATACAGTGCAATTATGCTACGACTAGGGAATGTACCTTGCAGATGCACATGAAGCTTCATAATGTTACATAA
- Protein Sequence
- MHIKAAHPIEKPFECNHCNYATASKSYLATHFKKVHSGIKPHKCNFCNYSTQNKSNLSMHLITHTGEKPYKCTRCDYSSKQPSLLKNHILMMHTNERPYKCTHCSYGTTTSARLKTHIKKHTGERPYKCPECDFSAIKNYDLKKHSLVHTTEKPYKCTECNYAANQMKLLRAHIRTVHIGERPFKCSQCTYDTIKKKRLEIHIQTHTVEKSYKCSQCNYHTVKSDLLKKHMKSVHSSETLLKCTQCSYVAKKARSMKLHVIQIHNSKRCKCTECDFSTTSRKDFNKHLQTHTDVKLYKCSECYYIGTKLRWLTEHIKTVHTTEKQFNCTYCDYNTSRSANLRCHMKTHTDENAHKCTECDYSARLLSSLKNHISTNHADEKPFKCIQCNYATTRECTLQMHMKLHNVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -