Ccup010662.2
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284487.1:16280759-16284738[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0012 0.13 14.4 0.3 1 23 125 147 125 147 0.96 2 13 0.00035 0.039 16.1 1.6 2 21 247 266 246 267 0.94 3 13 0.0026 0.29 13.3 0.6 2 23 286 307 285 307 0.96 4 13 0.0068 0.76 12.0 0.2 1 23 324 347 324 347 0.94 5 13 0.016 1.7 10.8 0.0 2 19 354 371 353 375 0.92 6 13 0.0066 0.73 12.0 0.3 1 23 389 411 389 411 0.93 7 13 0.46 51 6.2 7.6 1 23 416 438 416 438 0.97 8 13 6e-06 0.00067 21.6 0.1 1 23 443 466 443 466 0.92 9 13 3.1e-05 0.0035 19.3 1.3 1 23 472 494 472 494 0.96 10 13 0.0021 0.24 13.6 0.5 1 23 500 522 500 522 0.98 11 13 0.00035 0.038 16.1 5.9 1 23 528 552 528 552 0.99 12 13 0.00042 0.047 15.8 3.3 1 23 558 580 558 580 0.98 13 13 0.0022 0.24 13.5 5.6 1 23 586 608 586 608 0.97
Sequence Information
- Coding Sequence
- ATGCACGATGCACAACTGTATGACTTAGAGAACGaaacacagaaaataaagtGGGACATAATAGGCCTAGGCGATGTTAGAAGAAAAGGCGAAGGTTTCATAATTCAACAGTCAGGAAATGCACTGCTATACAAAGGACACAACACCGAAAGCCAGTGGGGCATTGCCGCCGAAGATGGTTTACCTGAAACATTATGTTCTGTATGCACCGAACAATTAACCTCGGCTTATACGTTCATAAACCAATGTAAGGATGTTGATGCAAACTTGCGAAATTTGCTTGTCTTATCCGATCAAACCGAAGAAGAAACAGTAACTTCAAATTGCTCTGATAATTCCTTTCCAGCTTTAATAAAACATGAGAAAGACAAATATGTTTGTCAGGTTTGCGATGATGCTTTTACATCAAACTACCGATTAAGCAGACACATGGTTGAACACAATGTGAGTAAGAGTTTATTTGAACGATTTTTAGAGAGTCAAAGTCGGGACTCAAAATTTGCACTAAACTGTGAAATGACAGTTTGTCTAGATACTGAAACCATAAACCTTATTAAAGAACGGAAATCTTTGTTGCAatcaaaaactgttgaagtataTTCTGATCAAGCTCAAGAAAGTAGCAATTTAACTATGGAAATTGATGGTTACGAAAGCGTTTCAGAAGTTCCTGCGAAAGTTATGAATAAACTTGAACCACTACAAATCTCGGCGAAGAAATTTAACAAGGTTGAAATTGAATGTAAAATGtgtagtaaaaaatttagtagtCGAAAAGATTTGATTTCACATATATGCAATCCCCTCACAGATGAGCAAAAGCACACAAGTGATTCCAATCGTAAATTATTAACTACTTGTAGTCTGTGCGAGAAAGAATTTAATGATTTATCTGCGCTTTCCCTGCATTTTCTAAAACATGCACTTGCAACCACAAACATTGCAAATACTGGCATTGAAGCTGAATTTTTCTTTTGTGAAGTTTGTGGTGAAACTCTtgaatctgaatcatttttattaaaacattacaatGAAGATCATGAAGGAAAGCCAACCTGGCCTTGTTCGATCTGTTCAGAAGTATACGAAAGGGAAAGTGATTTGCTGAAACATGACATTATTCATGCAAGAAAAAAGTCAGAAAAttacattgaaaacaacaattttcCATGTGTGTTATGTAACGGAACATTCTCTTCAAAAAAAGCTCTATTAAAGCATTCCATTgaacatttaatgaaaaaatattcctgTAAAAAGTGTTCATCATCGTTTTGCACACAACATGCATATTTTGAACATTCAAAATTACATGCAGCTAATCAGTATACATGTCCAACTTGCGGAAAAGTTTTAAGTTCCAAGAGTGCTTTGAAATCGCACATTGTTGGTGTTCATTCAGTCGACCTGCGACATACATGTGCCACTTGTGGCAAAAGCTTTGCAACTCCAAGTCGTCTTCGAACTCATTCACAAATAcatgaaaataccaaaaaatatgtttgtacgTATTGTGGATATAGTGCACATAAAGTCGGAGATTTACAAATCCATACCAGGATTCATACCAGCGAGAGACCCTACAAATGTACATTTGCCAAGTGTTCCGcaagttttaaaacttcaagTCATTTATGTGAGCATGTGCGAAGACATCTGCAAATTCGTAAATTCAAGTGCAGtatttgttttgcaaatttttcaacaagtcATACATTGAAAATTCATCAATTGCAACACACAGGAGAGAGGCCGCACAGCTGCGTGGTGTGTAATCAGAAATTTAGGAGGAAATATCATGTGAGCGTACATATGAAACAACATCAACCGAAAGcttga
- Protein Sequence
- MHDAQLYDLENETQKIKWDIIGLGDVRRKGEGFIIQQSGNALLYKGHNTESQWGIAAEDGLPETLCSVCTEQLTSAYTFINQCKDVDANLRNLLVLSDQTEEETVTSNCSDNSFPALIKHEKDKYVCQVCDDAFTSNYRLSRHMVEHNVSKSLFERFLESQSRDSKFALNCEMTVCLDTETINLIKERKSLLQSKTVEVYSDQAQESSNLTMEIDGYESVSEVPAKVMNKLEPLQISAKKFNKVEIECKMCSKKFSSRKDLISHICNPLTDEQKHTSDSNRKLLTTCSLCEKEFNDLSALSLHFLKHALATTNIANTGIEAEFFFCEVCGETLESESFLLKHYNEDHEGKPTWPCSICSEVYERESDLLKHDIIHARKKSENYIENNNFPCVLCNGTFSSKKALLKHSIEHLMKKYSCKKCSSSFCTQHAYFEHSKLHAANQYTCPTCGKVLSSKSALKSHIVGVHSVDLRHTCATCGKSFATPSRLRTHSQIHENTKKYVCTYCGYSAHKVGDLQIHTRIHTSERPYKCTFAKCSASFKTSSHLCEHVRRHLQIRKFKCSICFANFSTSHTLKIHQLQHTGERPHSCVVCNQKFRRKYHVSVHMKQHQPKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -