Basic Information

Insect: Ctenicera cuprea
Gene Symbol: -
Assembly: GCA_958336395.1
Location: OY284493.1:4444104-4447431[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.8 4.2e+02 3.4 0.1 12 23 173 184 168 184 0.83

2 12 0.00089 0.099 14.8 2.4 1 23 190 212 190 212 0.99

3 12 2.7e-07 3e-05 25.9 2.4 1 23 218 240 218 240 0.99

4 12 1.8e-05 0.002 20.1 3.3 2 23 247 268 246 268 0.97

5 12 7.8e-07 8.7e-05 24.4 2.5 1 23 274 296 274 296 0.99

6 12 0.00029 0.033 16.3 6.0 1 23 302 324 302 324 0.98

7 12 0.06 6.7 9.0 0.3 11 23 340 352 330 352 0.90

8 12 6.7e-05 0.0074 18.3 5.4 1 23 358 380 358 380 0.98

9 12 1e-05 0.0012 20.9 1.5 1 23 386 408 386 408 0.98

10 12 1.3e-05 0.0015 20.5 4.3 1 23 414 436 414 436 0.98

11 12 0.027 3 10.1 2.2 2 23 443 464 442 464 0.84

12 12 4.2e-05 0.0047 18.9 4.0 2 23 471 492 470 492 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.8	4.2e+02	3.4	0.1	12	23	173	184	168	184	0.83
2	12	0.00089	0.099	14.8	2.4	1	23	190	212	190	212	0.99
3	12	2.7e-07	3e-05	25.9	2.4	1	23	218	240	218	240	0.99
4	12	1.8e-05	0.002	20.1	3.3	2	23	247	268	246	268	0.97
5	12	7.8e-07	8.7e-05	24.4	2.5	1	23	274	296	274	296	0.99
6	12	0.00029	0.033	16.3	6.0	1	23	302	324	302	324	0.98
7	12	0.06	6.7	9.0	0.3	11	23	340	352	330	352	0.90
8	12	6.7e-05	0.0074	18.3	5.4	1	23	358	380	358	380	0.98
9	12	1e-05	0.0012	20.9	1.5	1	23	386	408	386	408	0.98
10	12	1.3e-05	0.0015	20.5	4.3	1	23	414	436	414	436	0.98
11	12	0.027	3	10.1	2.2	2	23	443	464	442	464	0.84
12	12	4.2e-05	0.0047	18.9	4.0	2	23	471	492	470	492	0.97

Sequence Information

Coding Sequence: ATGGAATCAGGAAATCCAGAAGTCATGAGTGAACTCGCTTCCATATCTGATGCTTCCCATTCAAATGATATCAAGATAGAATTTCCACTTTTCGAGCCAAATTCACATGGTGAATTTGTGCAGAATGCTATTGgtagtgcatatactggtacgaatttaaaattggagatggaAGATGAAATAAAACTTGACGTCACAAGTGAAGGTTCGTTTATTGCCGATACCATATCTGATGCTTATCAATCGCAAGAAATCAAGAAAGAGTTTCCTCTTTCTGAATCATATTCACATGGTGGGATTGTGGAGCATGCCATTGtgaaacacgaagatagTAACATTCAATCGTTGGACCTACAAATAAAATCACACGTTCCTGATGTAAAATGTGGCATCAAGAGCGATAATATCTACATAAAGTGTGAGCCACTGATGACTGAGGAGGTACATATAAAAGATGAAGCTCTTACAGGGgaaaaacctttaaattgtGAAGGAGGAGGTGGTTATAGATCTGCAGTAAGAAGTACCTTAGAAACgcatataaaaattcatactggtgaaaaacctttcaaatgtaatttatgtgattatactTCTATATGGAAGAGTCACTTACAAGaccatataaaaactcatactggcgaaaaaccttttaagtgtgATATTTGTGATTAtggatttatacaaaaaaatcacttacaaagacatatgaaaattcatactagtgaaaaacctttaaaatgtaatatatgtgattatagatgtatattcaaaagtaacttacgatcacatatgaaaattcatactggtgaaaaaccgtttaaatgtaatgtatgtgattatgcaTGCGTAGGCAAAAGCAACTTACAAAggcacatgaaaactcataccggcgaaaaaccttttaaatgtaatctatgtaattatagatgtatacaaaaaactaatttacacAAGCATATGATaattcatactggcgaaaagCCTTATacatgtaatATGTATACAGAACAatctataAGAAAGAGTGATTTgcgaacacatatgaaaactcatactggtgaaaaaccttttatatgtaatttatgtgattatacatgTATACAGAAGAGGCACTTACAagaccatatgaaaactcatactgatgaaaaaccttttatatgtagtttatgtgattatagatctataAGAAAGAGTGACTTgcgaacacatatgaaaactcatactagTGAAAAATCTtttgaatgtaatttatgtgattatacatgTATACAGAAGGGTCACTTACAAgatcatatgaaaactcatactggtgaaaaaccttttaagtgtaatatatatgattatagatgtatacgcaAGAGTTACTTACgaaaccatatgaaaactcatactggcgaaaaaccttgtaaatgtaatttatgtgattatgcATGCATAGAGAAAAGCAACTTACAGAGACATATGataactcatactggtgaaaaaccttttatatgtaattga
Protein Sequence: MESGNPEVMSELASISDASHSNDIKIEFPLFEPNSHGEFVQNAIGSAYTGTNLKLEMEDEIKLDVTSEGSFIADTISDAYQSQEIKKEFPLSESYSHGGIVEHAIVKHEDSNIQSLDLQIKSHVPDVKCGIKSDNIYIKCEPLMTEEVHIKDEALTGEKPLNCEGGGGYRSAVRSTLETHIKIHTGEKPFKCNLCDYTSIWKSHLQDHIKTHTGEKPFKCDICDYGFIQKNHLQRHMKIHTSEKPLKCNICDYRCIFKSNLRSHMKIHTGEKPFKCNVCDYACVGKSNLQRHMKTHTGEKPFKCNLCNYRCIQKTNLHKHMIIHTGEKPYTCNMYTEQSIRKSDLRTHMKTHTGEKPFICNLCDYTCIQKRHLQDHMKTHTDEKPFICSLCDYRSIRKSDLRTHMKTHTSEKSFECNLCDYTCIQKGHLQDHMKTHTGEKPFKCNIYDYRCIRKSYLRNHMKTHTGEKPCKCNLCDYACIEKSNLQRHMITHTGEKPFICN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -