Ccup032836.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284491.1:31802654-31815332[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0011 0.13 14.4 0.5 3 23 218 239 217 239 0.95 2 21 1.3 1.5e+02 4.8 4.3 1 21 370 390 370 391 0.94 3 21 9.6 1.1e+03 2.1 0.4 6 21 457 472 455 473 0.90 4 21 4 4.5e+02 3.3 1.2 1 19 479 497 479 502 0.92 5 21 0.015 1.7 10.9 0.7 2 23 601 625 600 625 0.94 6 21 0.12 13 8.1 0.2 2 22 633 653 632 655 0.88 7 21 0.0011 0.12 14.5 0.2 1 23 677 699 677 699 0.98 8 21 0.0042 0.47 12.7 0.2 2 23 703 724 702 724 0.95 9 21 5.4e-06 0.0006 21.7 0.7 2 23 748 769 747 769 0.94 10 21 0.29 32 6.9 3.1 1 23 792 814 792 815 0.94 11 21 0.18 20 7.5 0.1 2 23 827 848 827 848 0.98 12 21 8.7e-05 0.0097 17.9 7.1 1 21 889 909 889 911 0.96 13 21 1.7 1.9e+02 4.5 0.8 3 23 934 954 932 954 0.96 14 21 0.0001 0.012 17.7 1.2 1 23 977 999 977 999 0.98 15 21 0.0018 0.2 13.8 0.2 2 23 1015 1037 1014 1037 0.94 16 21 0.00033 0.037 16.1 0.1 1 23 1060 1082 1060 1082 0.95 17 21 0.014 1.6 11.0 0.2 1 23 1118 1141 1118 1141 0.95 18 21 0.011 1.3 11.3 1.4 2 23 1150 1171 1149 1171 0.95 19 21 7.2e-05 0.0081 18.2 0.6 3 23 1185 1205 1184 1206 0.95 20 21 3.2e-05 0.0036 19.3 0.6 1 23 1214 1236 1214 1236 0.99 21 21 0.0095 1.1 11.5 0.0 1 23 1256 1279 1256 1279 0.93
Sequence Information
- Coding Sequence
- ATGAGTGAACGCAGGTGGGGCAATTTTAGCTCCTGTTGTCGACTGTGCTTGTCTGAGAAACTGGGCACGTTGAAGTCCATTTTCGAAGATGCGTCTCGTAGCCGAGAAATTGTGAACAACATTCGAATTTGTGTTGGAGTGACAATTCAAGCAAATGATAAATTATCAACCATGATATGCGAGCGATGTCTCTCGAGAGTAAATAGTTGGAacgattttagaaaattttgcagTGAAAATCAGTCAAAGCTGTTGGGATGGATGAATACATGGACTTCCAGTAATATAGCTGACATAaGTATACAGATTAAGGATGAAGTTGTGGAAGATGGTGAAGAACGGCCGCCTCCTCAAATTGTCGTTGACGATGATGATGTTATTCAAGTTAAAACTGAACCAATGGAAAATACATATGAAACTGAGCCTATGGAAGAAGACATATACGATTTGCCACCACCATTAACACCTCATCCACCTGATGAGCAAGTGCACAATTTTATGAATGAGAGTGATGATGAAGAAGTTGCTGAAAGTAATCAGACAAATGAAAATGAATCGGCTCCTCCTTATTTAGGAGAAGTATCAGAAGTTAATGGACTAGTAAATGGTGTAGAGGTATTAGATACACCACAGAATGCTGATGGAAGAAACTGCCGTATGTGTGATAAAGTATTTAGTAGTGCTGGAAATCGTAGGAAGCATGAAAATATAATCCACCGACGTAAAGAAAAGAACACAAACTCTTCTAAAAGCAACGAAACTGCGAGATCTAAAGAAAATGCAGATGCTGCTCAAAACAAACAAGGACCAAATTCTACTCCTGCTGAAACTTCTGCAAGAGCAAGAAGTACCTCAGGTAATGAAACAGAAATTCAGAAAATACAATTTGCTGCTGGTTTGCAACTACAGCAACGATCATCAAACTCTAGCCAGCAGGTACCCATAGAAAATATGCCCCTTACTAAGGTAGAAAttagttatttagaaaaatgtaaggTAATAGTAAAAATGACTGACACTTTAACATGTGCTTGCCACGATGAAAAGTTTGAAGATCTGAAAGATCTTTTTGCTCACTTAAAGAAGCAGCGCACTTGGTTTGCAATGTTTACTTGTTATAACTGTTTGATAACTTTTGGCGATCGATCCTCATACATGAAACATTATTGTCATTGTCCAAAAGATCTTTTGCAAAATCTCAAACGTCTATCAGAATCTCCAGTAAATCCTGAAATCAAAATACGATTGTATCAGAGTTATAAGTGTATAAGGTGCAattgtatttttagttttcatgaAGATTTTTGCAGTCATTTTGATGTAGAACATATGGAAATGTTACAAGATGCACCTCCATATGTTTGTTTATGTTCTAAATCATTTAACGAAGTGGAAGAGTACAAACAACACTTGCATATTTCAtgttttttgagatatttttgtgatatatgTTTTGGGGCCTTTCCATCTATGGATTCCTTCAAAGCTCATTGCGAAAATGAGCATGATTCTGCTGAAGGTAGTACTGTTGATTCGTATGATACCTTCCATAAATGTAGACTTATAAATCAAGAAGAAGTTGCACCTCCACCTACTTCTAGTAAAAGATCTTTACCTGTTGATGCTAATCCATCAAAGGAAAATGCAGAAAATACTGGTCCTAAAAGACGTAGAACTGTTAACTTACCAGTTACTTCTGCTGCTCCTGCGTTAGAACCAGAAGATCCCGATTATGCAGTAGAACCACAAAAAGTACTTAATCCGCATGCACTTCGTAATATAAAATCATCAAAACCAACGTCATGTCCTGCAGTAGGTTGTGGCAAACTGTATTCTTCATATCATAATATGTTACGTCATTATAAACTATCACACGATCAAACTGGTAAAATTTTAGTGTGTATGTATTGTCCACAAAAGTTTCGACTAATTAGTGAACTGAAAGAGCACGAGAGTTTTGAACATGGAAAAGAAAGTGAGGAAAATGTTGTGAAAACACCACCAAATCAGCGTTCAGATCAGTTTAAATTCTCTTGTCCAGAGTGTGGTGATTTATTCAAAAGTCTGGATGAGTGGAAAAAGCATATGGAGAAGCATCCAAAGAAAACGTGCACCGAATGCGGAAAACAGTTTGCTTTACAAGCCGAACTTGATCAACACAGAAGTGcccatttaaatattaaagtatataGGGATGCAAAAACACAGGGTTATAAAAGTACTATGGTTAGTCCCATTTTGATATGTGAAATTTGCGATAAGACGTTCAACACCAAAAGCGAGTTACGGCAACATAAATTACTGCATGAAAAGATGCCCGTTCTCAGTGCACATGATAGTGTTGTAGAAGAGAAAAAAGATCTGAGTAAAAAATACAGTTGCACTGTTTGTAATAAACATTATGTAAGTTATGGAGGAATATGGGACCATAATAAAAAGCATCATTCTGGCCACCACATGCCCAACGAGTATCCTCGCCAATGTGCTCAGTGTGCAAAAGTTTTAACATCAAGAGGTGCATGGGGAAACCATCAACGAATGCATGAACGTTTACTTGCTCAAAAAACATCAACTAAGAACACACAAGTAGAGGTTGCACCCACAAATCAAAATCGGACACCCAAGgccagagttatcaaaaatagcgATGATTCGGAATCTTACTATACCTGTAAGAAGTGTTTTAAGGTCTTTTCAAGCAAATACAATCTTAGAAATCATATGAAATGCCATGGTATTGTTTTAAATCCAAGTAGTAGAAGTAGTTCGAAAactggtaaaataataaaaacgtattGGTGCGACGTTTGCCATCAAGCATGTCCAGGCTTTGCTGAACTTCAAGAACACAAACAAGAACATCGAAACGAAAATGTTCCTAAACTAACTAACCAGACAGATTCAGTTGAACAAAAGAAACCCCTTGTGTTTACTTGTGATATTTGTACTCTTATTTTTTCGACTAATTTTGCTCTAAGACGGCATAGAGAAAAGCATCTGATCGAGCAGCCTTCTGACAACAAATCAAAACAGGTTgcagtttattgtaaatattgtaaaataccatttcaaaatttggatGAGTTGAATGAACATATGTCGAACGAGCATGATCAACCAAGTGCAAAACCAAAACAACAGCAACAACCGCAGTTACAAAAGAAATATGGACGAAAGTTTCCttgtaatttatgtaaaaaggTATTTGACAACTCGGGTGCACTTTCTTCACATCAAGGTTGGCATAAAAGAGGTACAtttggaaagaaaattttgagatcTCAGGAAAAAGTTGTTAGAACAATGTTGAAACAGATACCACAATCTTCTACACCTGCCGCAACTAATAAATATCAATGTTATACCTGTTCCCAGGAATTTGTGAACGATACTGCCTTACAAATACACATACTCGAATCGCACAGAAATGTTAATGCTACAGTGTTGAATTGTAACAGTTGTAAATTAAGCTTTGAATCAAAGTCGACCTACGATACACATATGCAATTGCATAAAGTAGTTGACAACCAAAAATCTATGAAACCAAATCCTTGCAAGTACTGTTCGGCTGGATTTAGTAGAAGTGATACCTTGAATGCTCATGTCAGGGTTCATCATAAGGAACATTATAGTGATACCTATAAATGTAATCAGTGTGAACGAGTATTTGATAAACAAAATGCTCTTACAATTCATTTGAAGGTACATGATCGGCAACGACATTCGGGAGAAAATACACCAAAACCgattcacaataaaaatatctatttttgttCGATTTGTGATGTAGGTTTTGCTGTTGCCAAAGATCTGCGCAATCATGTTGTTAGTGCTCATCCGTTCTGA
- Protein Sequence
- MSERRWGNFSSCCRLCLSEKLGTLKSIFEDASRSREIVNNIRICVGVTIQANDKLSTMICERCLSRVNSWNDFRKFCSENQSKLLGWMNTWTSSNIADISIQIKDEVVEDGEERPPPQIVVDDDDVIQVKTEPMENTYETEPMEEDIYDLPPPLTPHPPDEQVHNFMNESDDEEVAESNQTNENESAPPYLGEVSEVNGLVNGVEVLDTPQNADGRNCRMCDKVFSSAGNRRKHENIIHRRKEKNTNSSKSNETARSKENADAAQNKQGPNSTPAETSARARSTSGNETEIQKIQFAAGLQLQQRSSNSSQQVPIENMPLTKVEISYLEKCKVIVKMTDTLTCACHDEKFEDLKDLFAHLKKQRTWFAMFTCYNCLITFGDRSSYMKHYCHCPKDLLQNLKRLSESPVNPEIKIRLYQSYKCIRCNCIFSFHEDFCSHFDVEHMEMLQDAPPYVCLCSKSFNEVEEYKQHLHISCFLRYFCDICFGAFPSMDSFKAHCENEHDSAEGSTVDSYDTFHKCRLINQEEVAPPPTSSKRSLPVDANPSKENAENTGPKRRRTVNLPVTSAAPALEPEDPDYAVEPQKVLNPHALRNIKSSKPTSCPAVGCGKLYSSYHNMLRHYKLSHDQTGKILVCMYCPQKFRLISELKEHESFEHGKESEENVVKTPPNQRSDQFKFSCPECGDLFKSLDEWKKHMEKHPKKTCTECGKQFALQAELDQHRSAHLNIKVYRDAKTQGYKSTMVSPILICEICDKTFNTKSELRQHKLLHEKMPVLSAHDSVVEEKKDLSKKYSCTVCNKHYVSYGGIWDHNKKHHSGHHMPNEYPRQCAQCAKVLTSRGAWGNHQRMHERLLAQKTSTKNTQVEVAPTNQNRTPKARVIKNSDDSESYYTCKKCFKVFSSKYNLRNHMKCHGIVLNPSSRSSSKTGKIIKTYWCDVCHQACPGFAELQEHKQEHRNENVPKLTNQTDSVEQKKPLVFTCDICTLIFSTNFALRRHREKHLIEQPSDNKSKQVAVYCKYCKIPFQNLDELNEHMSNEHDQPSAKPKQQQQPQLQKKYGRKFPCNLCKKVFDNSGALSSHQGWHKRGTFGKKILRSQEKVVRTMLKQIPQSSTPAATNKYQCYTCSQEFVNDTALQIHILESHRNVNATVLNCNSCKLSFESKSTYDTHMQLHKVVDNQKSMKPNPCKYCSAGFSRSDTLNAHVRVHHKEHYSDTYKCNQCERVFDKQNALTIHLKVHDRQRHSGENTPKPIHNKNIYFCSICDVGFAVAKDLRNHVVSAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -