Ccup010253.2
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- ZFP42
- Assembly
- GCA_958336395.1
- Location
- OY284487.1:8638456-8639999[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0034 0.38 12.9 10.0 2 23 160 181 159 181 0.97 2 11 0.012 1.3 11.2 0.7 1 23 187 210 187 210 0.93 3 11 7.9e-06 0.00089 21.2 1.3 1 23 217 239 217 239 0.98 4 11 0.00024 0.027 16.6 3.6 3 23 247 267 245 267 0.98 5 11 1e-05 0.0011 20.9 0.2 1 23 275 297 275 297 0.97 6 11 1.2e-06 0.00013 23.8 1.0 1 23 303 326 303 326 0.97 7 11 1.5e-05 0.0017 20.3 1.8 1 23 332 354 332 354 0.98 8 11 0.0007 0.078 15.1 5.5 1 23 363 386 363 386 0.96 9 11 3.7e-05 0.0041 19.1 1.3 1 23 392 414 392 414 0.98 10 11 4.6e-07 5.1e-05 25.1 0.3 1 23 420 442 420 442 0.98 11 11 4.2e-06 0.00047 22.1 2.1 1 23 448 470 448 470 0.98
Sequence Information
- Coding Sequence
- ATGAAGACAGAAATTGACTTAAACAAGttagattttgataaaatctgCCGAATTTGCCTGCTACAATATGAAAATATGCAATCATTATTCACATCTGGGGCAATTGAGTATTTTGTTGAATGCGCTTCCGTTCAGgctACGCCAAATGATGGTTTACCTCAAACATTATGTGATATCTGCGTTTCGAGTCTACAGCATTCGTacaatttcaaaaagaaaatagaaacctCCGATCAAACATTGCGAAACTTTATATCAGAAAAGCTAACAACCAATGATAGTTCTGAAAATGAGGAATTTAACACAGATGATTTATCTGACTGTTATGAAGATAAATGTGAAGAAACGAAATCTAATATAACAGTGAGAAAGCGAGAGAAGCCTCGAAAGAATGCAGAGATGGATGCAGCTTTGGCCAAACTGATGGCTTCAGCACCGAATCCAATGAAAAAAGGTCAAAACGATTGTCAAGACTGCACTTGCCATATCTGTCAGAAAAAATTTAGTTGTAAGGGGCAATTAACAAGACATTTAAAGACACATACAGGAATTCGAAGTCACATTTGTGAGGCTTGCGGCAAAGCTTATATGGAATCTGGATCTTtacgcaaacattttttatcaaagCATACAGGCAGAGATAAACCCCATAAGTGTCCAGAATGTAATCAAGGTTTCGATTTAAGATCTACGTTAATTAGACATGTAAGGACACACACTGGGGAAAAGCCATTTGGCTGTGAACTTTGTCATAGGTTTTATCCATCAAAGTCATACTTGAATAAGCATAGAAAGacacattttggaaaaagagaaaaatCTTTCATCTGTGAAATTTGTAGCAAATCATTTACCTTAAAAGATGGATTAAAAGCCCATTTAGTAACACACTCAAATGAACGCCCTTATCAGTGCTCATTGTgtgataaaacattttcaatgaaAGGCTCTCTCCAATCGCACATTAAATATATTCACACCAAAGAAAAAGATTTCATGTGTCAAGTGTGCGCAAAAGCATTTGTTACAAAATGCGAATTAAATGAGCACATGCGaagacatacaggagaaaaaagAGAACCGAAACATTTTTGCACTATGTGTAATAAGAAATTGTCATCATCTACACACCTTAAACTGCATATTCGTTCAGAACATACAGGTGAACGGCCATATCATTGCGAGTTTTGTCCTAAAGCGTTTATTACAGCACAAGCATTGAAAATTCACAGACGATATCATACTGGTGAACGACCATATTCGTGTAGTTACTGTGGGAAGGGATTTGTAACAAACGAAAGCTTGAAAGTGCATGAgagaattcacactggtgagaGACCGTACATTTGCTCATTGTGTAATTCTTCATTTACACAAAGTAGTACTCTTAAAACTCATATGAAAAGTCACTAA
- Protein Sequence
- MKTEIDLNKLDFDKICRICLLQYENMQSLFTSGAIEYFVECASVQATPNDGLPQTLCDICVSSLQHSYNFKKKIETSDQTLRNFISEKLTTNDSSENEEFNTDDLSDCYEDKCEETKSNITVRKREKPRKNAEMDAALAKLMASAPNPMKKGQNDCQDCTCHICQKKFSCKGQLTRHLKTHTGIRSHICEACGKAYMESGSLRKHFLSKHTGRDKPHKCPECNQGFDLRSTLIRHVRTHTGEKPFGCELCHRFYPSKSYLNKHRKTHFGKREKSFICEICSKSFTLKDGLKAHLVTHSNERPYQCSLCDKTFSMKGSLQSHIKYIHTKEKDFMCQVCAKAFVTKCELNEHMRRHTGEKREPKHFCTMCNKKLSSSTHLKLHIRSEHTGERPYHCEFCPKAFITAQALKIHRRYHTGERPYSCSYCGKGFVTNESLKVHERIHTGERPYICSLCNSSFTQSSTLKTHMKSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00838832;
- 90% Identity
- -
- 80% Identity
- -