Basic Information

Insect: Ctenicera cuprea
Gene Symbol: -
Assembly: GCA_958336395.1
Location: OY284487.1:8642815-8644488[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00045 0.05 15.7 3.4 3 23 199 219 198 219 0.99

2 11 3.7e-05 0.0041 19.1 2.2 1 23 225 247 225 247 0.98

3 11 2.1e-05 0.0023 19.9 1.2 1 23 253 275 253 275 0.98

4 11 0.0053 0.59 12.3 0.1 1 23 281 303 281 303 0.96

5 11 0.0048 0.53 12.5 0.6 1 23 310 332 310 332 0.99

6 11 0.0012 0.13 14.4 0.2 1 20 338 357 338 361 0.91

7 11 0.00014 0.016 17.2 5.9 1 23 367 390 367 390 0.95

8 11 3.6e-05 0.004 19.1 0.2 2 23 400 421 400 421 0.97

9 11 1.1e-05 0.0012 20.8 0.4 1 23 427 449 427 449 0.98

10 11 8.1e-06 0.00091 21.2 1.0 1 23 455 477 455 477 0.96

11 11 3e-08 3.4e-06 28.8 0.8 1 23 483 505 483 505 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00045	0.05	15.7	3.4	3	23	199	219	198	219	0.99
2	11	3.7e-05	0.0041	19.1	2.2	1	23	225	247	225	247	0.98
3	11	2.1e-05	0.0023	19.9	1.2	1	23	253	275	253	275	0.98
4	11	0.0053	0.59	12.3	0.1	1	23	281	303	281	303	0.96
5	11	0.0048	0.53	12.5	0.6	1	23	310	332	310	332	0.99
6	11	0.0012	0.13	14.4	0.2	1	20	338	357	338	361	0.91
7	11	0.00014	0.016	17.2	5.9	1	23	367	390	367	390	0.95
8	11	3.6e-05	0.004	19.1	0.2	2	23	400	421	400	421	0.97
9	11	1.1e-05	0.0012	20.8	0.4	1	23	427	449	427	449	0.98
10	11	8.1e-06	0.00091	21.2	1.0	1	23	455	477	455	477	0.96
11	11	3e-08	3.4e-06	28.8	0.8	1	23	483	505	483	505	0.99

Sequence Information

Coding Sequence: ATGGAATCGTTTACAAAATATGAACACCTACAAATAGAAGAAGTATGCAGAATATGCCTAACCAAAAAAGatcaaatgaatttaatttgtgaagCTGGTGTTGCAGATATGTTGTTGGAATGTGCCTCAGTACaagtgACACCTGAAAACGgcttatttaatttagtatGTAGTCAATGTGCAAACGAAGTAAGCCGGTGGTACGTTTTTAAACAACAAGTGGTTCGTTCATTCGAAATAGGTAGTTGGTTATTGGAAAAAAAGACAAAAGGCACCTTACCTACCATCACTGAAACAGAGAAGGAAGAAACGGATTACTCTTATAAGCATGATGAAAGTACCACCAGTTCTAATGCTTCGCAATCTAGCTCGATTATTGAAGACGTAGAAAAATTAGAGAGCCTGCTAATAGAACATGCACCGGATATAATGAATACACATAATGAAACCGTCGATCAAATTAGTGATATAAATTCTATAATTAATACTATAAATAGTGTTGCGTTAGATCATATAAACAGTAGCGAAGCAGAGATATCAACTTCCTCAGTTACAACAGGTCCAAAGCGCAAGAAAACACCTGAGGAATTGCTATGTAATGTGTGCGGCAAACAATGTTCTTCCACTAATTCCTACAATCGACACATTAAAACACACGATAATGCCAGACCATATGTTTGTTGCAAATGTGATAAACCTTTCAAAACTTCACAAGTCCTCGCTGAACATATGAAAAGGCATTATGATGATAGGAGGCATAAGTGTGGCGTTTGTGGGCAAAAATTCTATGCAAAAGCTAGTTTAAATGATCACATGAGATCGCACACTGGTGAAAGAccatttaaatgtgaaatatgTGTGAGAGCTTTTGCTACAAAAGCAATTTTAAGGCAACATACGGTGGTACATAcagtaagagaaaaaaaatatcaatgtgAAATCTGCAATAAATATCTTTTAACAGCAGGAAGCTTAGAAACACATAAACGTAAGCATACAGGAGTTAAACCTTTTCCCTGTTCAGGCTGCGAGAAAGCATTCTTTACCAAAGAGGCAATGCAGAGACATTTTGGTGCAATCCATGACACCGATAACAATTTCCTTTGTAATGTGTGCTCGAAAGTGTGCAGTACAAAGGTGCATTTAAACAACCATatgaaaaagaaacatttagGGCTAGGACGGCCTGCTAATGCCGTGTGCAATGAATGTGGAAAACAATGTGGTTCAGCTGCAGAATTGAAAGTACATATTCGTGTCCACACTGGAGAAAGACCATACGTATGTGATATTTGTGATAAGCGATTTATAGCTAGGGGAAATTTAAATTCACACAAGCAGAGACATAGTGGGAAAAAACCCTATTTGTGCAACCACTGCGGAAAAGCTTTTGGAGAAAAATCAACTTTGAAGGTGCATGAACGTATACATACGGGAGAACATCCATATACTTGTAATATATGTGGAAAAACTTATATACAAAGTAGTGCGCTTAGAACGCATATGAAAAGTCACTGGAAATGa
Protein Sequence: MESFTKYEHLQIEEVCRICLTKKDQMNLICEAGVADMLLECASVQVTPENGLFNLVCSQCANEVSRWYVFKQQVVRSFEIGSWLLEKKTKGTLPTITETEKEETDYSYKHDESTTSSNASQSSSIIEDVEKLESLLIEHAPDIMNTHNETVDQISDINSIINTINSVALDHINSSEAEISTSSVTTGPKRKKTPEELLCNVCGKQCSSTNSYNRHIKTHDNARPYVCCKCDKPFKTSQVLAEHMKRHYDDRRHKCGVCGQKFYAKASLNDHMRSHTGERPFKCEICVRAFATKAILRQHTVVHTVREKKYQCEICNKYLLTAGSLETHKRKHTGVKPFPCSGCEKAFFTKEAMQRHFGAIHDTDNNFLCNVCSKVCSTKVHLNNHMKKKHLGLGRPANAVCNECGKQCGSAAELKVHIRVHTGERPYVCDICDKRFIARGNLNSHKQRHSGKKPYLCNHCGKAFGEKSTLKVHERIHTGEHPYTCNICGKTYIQSSALRTHMKSHWK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01345881;
90% Identity: iTF_00789583;
80% Identity: -