Basic Information

Insect: Ctenicera cuprea
Gene Symbol: pita_1
Assembly: GCA_958336395.1
Location: OY284487.1:9677187-9679465[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.6e-06 0.00051 22.0 1.8 2 23 274 295 273 295 0.98

2 9 4.4e-07 4.9e-05 25.2 3.3 1 23 301 323 301 323 0.99

3 9 1.2e-06 0.00013 23.8 2.8 1 23 329 351 329 351 0.99

4 9 1.3e-08 1.5e-06 30.0 0.9 1 23 357 379 357 379 0.98

5 9 3.2e-06 0.00035 22.5 5.5 1 23 385 407 385 407 0.99

6 9 3.3e-05 0.0037 19.3 1.1 1 23 413 435 413 435 0.97

7 9 1.6e-05 0.0017 20.3 1.6 1 23 441 463 441 463 0.98

8 9 6.9e-05 0.0077 18.3 0.5 1 23 469 491 469 491 0.97

9 9 1.3e-05 0.0015 20.5 0.9 3 23 499 519 497 519 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.6e-06	0.00051	22.0	1.8	2	23	274	295	273	295	0.98
2	9	4.4e-07	4.9e-05	25.2	3.3	1	23	301	323	301	323	0.99
3	9	1.2e-06	0.00013	23.8	2.8	1	23	329	351	329	351	0.99
4	9	1.3e-08	1.5e-06	30.0	0.9	1	23	357	379	357	379	0.98
5	9	3.2e-06	0.00035	22.5	5.5	1	23	385	407	385	407	0.99
6	9	3.3e-05	0.0037	19.3	1.1	1	23	413	435	413	435	0.97
7	9	1.6e-05	0.0017	20.3	1.6	1	23	441	463	441	463	0.98
8	9	6.9e-05	0.0077	18.3	0.5	1	23	469	491	469	491	0.97
9	9	1.3e-05	0.0015	20.5	0.9	3	23	499	519	497	519	0.97

Sequence Information

Coding Sequence: ATGGagttagatttttcaaaaatatgcagggtTTGTTTGAACGAAGGAATAATGATGtccatttttaaagtaaatgtttcaaAGAAAATGATGGCTTGTTCTTCTGTACAGgttTGGCAAAATGATGGTCTTCCTGcccaaatatgtaataaatgtttagcgAAACTCCacatttcatttcaatttaaaaaacaatgtgaAAAATCCGATGCAAAAATGAGACAGTATTTAACAGACCCGCCAAAAGATAAACTTCAACAGTCActtcaacaacaacaacaacagcagcaacaacaacaacagcaacaacaacagCAGCAACAACACCAAGTACAACAACCACAACAGCAACCGCAGCCTCAACAGCAGCATCAAATTATGCATCAAACTCCTCAACCAACACAAAATAGTTGTGTTTATATAGAATGTGCACCGTTATTAGATTTACAAGAGCAAAGGTTCGATGCAGTAGGCTCTATTACGCAACCACTCTCACAAATCAATTACAATGTTCAAACACAAAACCATATACCTTTAGGCTACACTTTACCAACTGTAAGCCAAGTTCAGGTATACAACAGTACCTATACTATGCCAATACAACAAATGCAGTCggtaaatttattacaaaatcaaGTAATGGTGCCACCGGGGCAGTTACAACCCCAGATGCAACAAATAGTGCAGCCTCAGCAGCAGCCACAAGAACAGCAAATTATGCAGGCACAGCAGATGCCACATATACAGTCTGATCCAAAAGACAAATTAAAGCGCGGTGGAAAATTAAAGCGTGATGGAAAAGTAAATGATGCCATAAAACAATGTCCTACATGTAGTAAAATTTTTCCCACATCAACTAAATTAAGTCGACATATGAAGACACATTCGACAGATATGCCTTATAAATGTAAGGTGTGCAATAAAGCATTTTCACATAGCGGTAATTATAAGATACATTTGAGGATGCATACAGATGAACGACCATTTAGATGTACCATGTGTGATAAAGGATGCAGGCAAGCACAAGATCTAGAAAAACATATGCGGACTCATACTGGTGAGAAACCACATCAATGTACTCTTTGTCCTAAAGCATTTTCAACAAGTTCTAATCTGATTGCTCACATAAGGACGCATACAGGTGAAAAGCCATACGTATGCTGTGTATGTCAAAAAGCCTTTTGCCAATCTAATGAACTTACAAAGCATATGAGAACTCACACTGGCGAAAAATCTCACATGTGCGACATCTGccaaaaagGTTTTAATGGATCAAGTACGTTAATTGTTCATAGGCGATCTCATACAGGTGAAAGACCTTATGTATGCAAAACTTGCAATAAGGGTTTTGCACAGTCGAGTTGTTTGGCAGTTCATGTAAAACGTCACAACGGAgagaaaaattttgtatgcttgTCATGTAACAAATCATTTGTAACAAACGCTGATCTTAAAGAGCATTCTTTGACACATACTGGTGATAAACCTTATGGATGTAATGTGTGTGATAAACGATATTCCAGAGCTAATGATCTCAATCGACATAGTAAGACTCATATATAA
Protein Sequence: MELDFSKICRVCLNEGIMMSIFKVNVSKKMMACSSVQVWQNDGLPAQICNKCLAKLHISFQFKKQCEKSDAKMRQYLTDPPKDKLQQSLQQQQQQQQQQQQQQQQQQQHQVQQPQQQPQPQQQHQIMHQTPQPTQNSCVYIECAPLLDLQEQRFDAVGSITQPLSQINYNVQTQNHIPLGYTLPTVSQVQVYNSTYTMPIQQMQSVNLLQNQVMVPPGQLQPQMQQIVQPQQQPQEQQIMQAQQMPHIQSDPKDKLKRGGKLKRDGKVNDAIKQCPTCSKIFPTSTKLSRHMKTHSTDMPYKCKVCNKAFSHSGNYKIHLRMHTDERPFRCTMCDKGCRQAQDLEKHMRTHTGEKPHQCTLCPKAFSTSSNLIAHIRTHTGEKPYVCCVCQKAFCQSNELTKHMRTHTGEKSHMCDICQKGFNGSSTLIVHRRSHTGERPYVCKTCNKGFAQSSCLAVHVKRHNGEKNFVCLSCNKSFVTNADLKEHSLTHTGDKPYGCNVCDKRYSRANDLNRHSKTHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00951158;
90% Identity: -
80% Identity: -