Basic Information

Insect: Ctenicera cuprea
Gene Symbol: -
Assembly: GCA_958336395.1
Location: OY284495.1:17632192-17641315[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0026 0.29 13.3 2.2 2 23 366 387 365 387 0.94

2 12 0.0081 0.9 11.7 0.4 2 23 390 412 389 412 0.95

3 12 9.7e-07 0.00011 24.1 1.7 2 23 484 505 483 505 0.97

4 12 0.00056 0.062 15.4 0.4 1 23 511 533 511 533 0.97

5 12 0.00056 0.062 15.4 1.4 2 23 540 561 539 561 0.97

6 12 2.3e-05 0.0026 19.8 1.7 1 23 567 589 567 589 0.98

7 12 0.00031 0.035 16.2 0.8 1 23 595 617 595 617 0.98

8 12 3.5e-07 3.9e-05 25.5 1.7 1 23 625 647 625 647 0.98

9 12 0.0043 0.48 12.6 0.2 1 23 653 675 653 675 0.96

10 12 3.1e-05 0.0034 19.4 1.3 1 23 681 703 681 703 0.98

11 12 0.00056 0.062 15.4 0.6 1 23 709 731 709 731 0.98

12 12 9.5e-06 0.0011 21.0 0.5 1 23 737 759 737 759 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0026	0.29	13.3	2.2	2	23	366	387	365	387	0.94
2	12	0.0081	0.9	11.7	0.4	2	23	390	412	389	412	0.95
3	12	9.7e-07	0.00011	24.1	1.7	2	23	484	505	483	505	0.97
4	12	0.00056	0.062	15.4	0.4	1	23	511	533	511	533	0.97
5	12	0.00056	0.062	15.4	1.4	2	23	540	561	539	561	0.97
6	12	2.3e-05	0.0026	19.8	1.7	1	23	567	589	567	589	0.98
7	12	0.00031	0.035	16.2	0.8	1	23	595	617	595	617	0.98
8	12	3.5e-07	3.9e-05	25.5	1.7	1	23	625	647	625	647	0.98
9	12	0.0043	0.48	12.6	0.2	1	23	653	675	653	675	0.96
10	12	3.1e-05	0.0034	19.4	1.3	1	23	681	703	681	703	0.98
11	12	0.00056	0.062	15.4	0.6	1	23	709	731	709	731	0.98
12	12	9.5e-06	0.0011	21.0	0.5	1	23	737	759	737	759	0.98

Sequence Information

Coding Sequence: ATGGCGACAGAGGACGGCACGAGATACGGTGATTTATGCAGACTTTGtgctacaaaaacaaatatggtACTAggcattaatatttttgaaaatgaggGCGCAATTCgtcaaataaataagaaaattgagaCATGTCTTCCAGTTCAGgtacatgAAACAGACGAACTGCCAAAAATGATATGTGAAAATTGTGTGTAcaaattagaattattttttgagtttagAGAACGATCCATACGtactgaaaacattttaataagcCTCTTCAAAGAAATAAGCGCCACCAAGTTACCTAATGAtcaacaaattgttaaaataacacAACCCTTAGATGTAGCCGATATTGATCATCCAGAAATGATAATGATCCAACATCACCACCAACTTTTAAACGAGCATGAAATACAGAATGTCAATGATATTGACCTATCCCAGTTGCAACAACGTGACATGATTGTTGaacatgaaattattttatcacatCAAAATGTTGATATTAATGCTCATTCTTTAGCTAACATCGATTTAAATCATCATGAACTTGCTGGCCAAGATTTATCTAATCAGGAAACCATTTTGGTTGATGATACAAGTGGAGTCCAGTATACTGAAGAAAATTTGCATCTTATTCAACAAGAACATCAGTTATTAACGGAACAGTATAGGTTACAACATGGTCTGCATGtaaatattacagaaaacaaTACAGTTTGTAGTAATATAACTGTTACTACTTCGCCAAATGAACACATTCAACCACAGGATGATATTGTTGAGAGAAAAACTGTAGTGAAACAAGAGAAACCCCAATCTAAATTGGAGATGGCATTGAAACAagataaagtagaaaataattcGCAAATTAAGAATCTCAAGGATGATGATAAATTTCCAAATAGTATGAACACATCGATTTTGGAATGTGGGCAGTCTGAACAGTGTAATAACAATGAGAGTCAGCTGACTGTAGACGATCAATTCGGTGATATAAACAAGGATAGACACGACATGTACATTGACTCTGTGATTacatgtgaaaatagcaatacTAGTGTGTGTATGAGTGCAAATTCTAGCAACGATGGTGAATGGTTACATTGCAACATGTGCGGAAAGAGTTTCAATGAAAAAATGGAGTTTCAGTTGCATTATGATCAGCATTTTAATAAGTGTATGACTTGTTTAGCGGTGTTTACTAATCGGGATGCCTTGAATGCTCATCGGAAAGAAATGCACGGTTCTAATGTGGAAGATATTAAGcCTATTAAAACAAGGTTAAAGCGAGCGACAGTGccattaaaaaaagataaagataacTTAAAGGAAGAAAGCAATAGTGATAGTGAAGGTATCAACAACCTTGACAATATTGAAGATGAAGAGGATGAGGATGATCCCGAAGCTGATGTATTAGTTCCAAGTATTAAGCGTAAAAAGTGGACTCCTAAGGAGTGTAAGGAGTGTGGGAAAACATATAAAACCAACTATAAGCTTGCCGAGCACATGCGTaaacatacaggagaaaagccttaCAAATGTAGCTCGTGCGAGAAGGCTTTCCGGTCTAAAATTGGATTGGCGCAACATGAAGCCAAGCATACAGGTCAATATGATTTATCTTGCCCTACCTGTGGTAAAGGATTTCAatgtaaaagttatttaatgGTACATCAACGAGTACATTCAGATATCAAACCTTATCCATGTACCACCTGTGgacgaaattttaaaaccaaacagTCGTTACTTGAtcacacaaacagacatttagGTGTAAAACCATACATGTGTGATATTTGTGGACGAGGATTTATTACAAAagGTTTATGCAAAGCCCACCAAAAGGTACACACGGGTTTAGATAATAGAAAATACTCCTGCAAGGTGTGCAACAAAATGTTTGTATCAAAAAGTTATCTTCAAACCCACTTGAGGATTCACACTGGGGAAAAACCATTTATGTGTGAAGTATGCGGTAAAGGGTTCCTGACAAGAGTCGATTTAAGAATTCATTCCACAATGCATACTGGAGAAAAGTCCTACGTTTGTGAGATGTGTGGTAAAGCATTTGCACGCCGAGATGCACTAAGATGTCATCGTAGATCCCATACAGGAGAAAGACCTTATAGttGTGATCAGTGTGGGCAAACTTTCACCCAATTTTCACCCATGGCTATTCACAAAAGGCTTCATACAGGAGAGAGGCCCTATAGCTGTGAAGTATGTGGAAAAGCGTTTGTTTCTAGATCTACTATGATGTCCCATTGGAAAAAACATGTTCGATAA
Protein Sequence: MATEDGTRYGDLCRLCATKTNMVLGINIFENEGAIRQINKKIETCLPVQVHETDELPKMICENCVYKLELFFEFRERSIRTENILISLFKEISATKLPNDQQIVKITQPLDVADIDHPEMIMIQHHHQLLNEHEIQNVNDIDLSQLQQRDMIVEHEIILSHQNVDINAHSLANIDLNHHELAGQDLSNQETILVDDTSGVQYTEENLHLIQQEHQLLTEQYRLQHGLHVNITENNTVCSNITVTTSPNEHIQPQDDIVERKTVVKQEKPQSKLEMALKQDKVENNSQIKNLKDDDKFPNSMNTSILECGQSEQCNNNESQLTVDDQFGDINKDRHDMYIDSVITCENSNTSVCMSANSSNDGEWLHCNMCGKSFNEKMEFQLHYDQHFNKCMTCLAVFTNRDALNAHRKEMHGSNVEDIKPIKTRLKRATVPLKKDKDNLKEESNSDSEGINNLDNIEDEEDEDDPEADVLVPSIKRKKWTPKECKECGKTYKTNYKLAEHMRKHTGEKPYKCSSCEKAFRSKIGLAQHEAKHTGQYDLSCPTCGKGFQCKSYLMVHQRVHSDIKPYPCTTCGRNFKTKQSLLDHTNRHLGVKPYMCDICGRGFITKGLCKAHQKVHTGLDNRKYSCKVCNKMFVSKSYLQTHLRIHTGEKPFMCEVCGKGFLTRVDLRIHSTMHTGEKSYVCEMCGKAFARRDALRCHRRSHTGERPYSCDQCGQTFTQFSPMAIHKRLHTGERPYSCEVCGKAFVSRSTMMSHWKKHVR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00838823;
90% Identity: -
80% Identity: -