Basic Information

Insect: Ctenicera cuprea
Gene Symbol: -
Assembly: GCA_958336395.1
Location: OY284486.1:3825540-3827378[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 7.6e-05 0.0084 18.1 5.8 1 23 76 98 76 98 0.99

2 17 0.062 6.9 9.0 5.9 2 23 105 126 104 126 0.96

3 17 4.1e-05 0.0046 19.0 4.2 1 23 132 154 132 154 0.98

4 17 2.1e-05 0.0024 19.9 2.7 1 23 191 213 191 213 0.99

5 17 0.0019 0.21 13.7 4.0 2 23 220 241 219 241 0.95

6 17 0.00098 0.11 14.6 2.8 1 23 247 269 247 269 0.98

7 17 0.00051 0.057 15.5 3.6 1 23 275 297 275 297 0.98

8 17 0.00012 0.014 17.5 4.3 1 23 303 325 303 325 0.98

9 17 0.02 2.2 10.5 2.7 2 23 332 353 331 353 0.97

10 17 1.3e-05 0.0014 20.6 1.6 1 23 359 381 359 381 0.98

11 17 6.4e-05 0.0071 18.4 5.2 1 23 387 409 387 409 0.99

12 17 0.0032 0.36 13.0 3.0 1 23 415 437 415 437 0.99

13 17 0.0012 0.13 14.4 4.9 1 23 443 465 443 465 0.98

14 17 4e-05 0.0045 19.0 2.8 1 23 471 493 471 493 0.99

15 17 0.00096 0.11 14.7 7.2 1 23 499 521 499 521 0.98

16 17 0.0009 0.1 14.7 6.8 1 23 527 549 527 549 0.99

17 17 0.033 3.7 9.8 4.1 1 23 555 577 555 577 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	7.6e-05	0.0084	18.1	5.8	1	23	76	98	76	98	0.99
2	17	0.062	6.9	9.0	5.9	2	23	105	126	104	126	0.96
3	17	4.1e-05	0.0046	19.0	4.2	1	23	132	154	132	154	0.98
4	17	2.1e-05	0.0024	19.9	2.7	1	23	191	213	191	213	0.99
5	17	0.0019	0.21	13.7	4.0	2	23	220	241	219	241	0.95
6	17	0.00098	0.11	14.6	2.8	1	23	247	269	247	269	0.98
7	17	0.00051	0.057	15.5	3.6	1	23	275	297	275	297	0.98
8	17	0.00012	0.014	17.5	4.3	1	23	303	325	303	325	0.98
9	17	0.02	2.2	10.5	2.7	2	23	332	353	331	353	0.97
10	17	1.3e-05	0.0014	20.6	1.6	1	23	359	381	359	381	0.98
11	17	6.4e-05	0.0071	18.4	5.2	1	23	387	409	387	409	0.99
12	17	0.0032	0.36	13.0	3.0	1	23	415	437	415	437	0.99
13	17	0.0012	0.13	14.4	4.9	1	23	443	465	443	465	0.98
14	17	4e-05	0.0045	19.0	2.8	1	23	471	493	471	493	0.99
15	17	0.00096	0.11	14.7	7.2	1	23	499	521	499	521	0.98
16	17	0.0009	0.1	14.7	6.8	1	23	527	549	527	549	0.99
17	17	0.033	3.7	9.8	4.1	1	23	555	577	555	577	0.97

Sequence Information

Coding Sequence: ATGAACCTTGTCGAAGAGGTAAATAATAAGGGCGTGACTAGCTCAAGTATTATTAAGCAAGAGACAGACGAAATTAGTGGTTACGCTTTAGCACATATCAAAGAGGAGGAGCTTGACATCAAAGAAGAACCTACCAATGCAGAAGAAACCATTGATACGATATTAATAAACCTTATTGACTCAAAACAAGATGAAACATTGAAAAAGACTAATAGAACAATGCCCTATGAGTGCCATTCTTGTTCTCGTACGTTTTCAACGAAAACGACATTAAATTACCATTTAAGGAaacatactggagaaaagctATTACAttgtacaatttgtaattataagtGTAGTAAAAGGTCTCGTTTAATAATTCATAACAGAacacacactggagaaaagccgtACAATTGTAACATTTGCGATTATAAGTGTGTTCAGAGAAATTATTTAACCAAACATATGCAGACTCACTTTAAAGAAGAAAGTACAAATGTAGATGGCACCAAAGGTTCAACATCCTCAAACATTATCGAATTGAAACAAGATGAACACGCAGGAGAGGCTAACCAAACAATGCGTTATGAGTGTCATTCTTGTTCTCGTACGTATTCAACGAAAGCTACTTTAATTTACCATATGAGAATACATACAGGTGAAATGCCATTACAATGTACAATTTGCGATTATAAGTGTAACACAAAGTACCAATTGAAAGTTCATAACAGCAaacacactggagaaaagccgtACAACTGCAACATTTGCGATTATAAGACTTCCGAGAAGCATCGCCTAACAGACCATATGAAAGTTCACACGGGAGAGAAGCCATTTAACTGTACATCTTGTGATTATAGAAGTAACAAAAAATCTCACTTAATTGATCATATAAGAACCCATACTGGGGAACGACCATTTAGCTGCAACTTATGCGATTACACGTGTTCTCAAAAAGTCCAATTAACTTATCATTTGAAAACTCATTCAGAAGCAAAACCCTTGCGCTGTACCATCTGTAATTACAGTTCTGTTCAAGAAAAACTACTGAAATGCCATATGAGAATGCACTGTGGTGAAAGGCCGTACAGCTgtacaatttgtaataaaagtttcattCAAGAATCGAAACTATCTTATCATTTAACAACACACACTGGCGAAAAGCCATATAGCTGTACAATGTGTGATTACAGCTGCAGGGATAAGTACCAACTAACGTATCATTTAAAGACGCATACTGGTGAAGAACCGTATCGATGTACTTTTTGTGAGTATAAAAGTTCGCTAAAATCACGGTTACAAAAGCATCTTAGGATTCACACAGCGGACCGGCCCTATAGTTGCAATATTTGTGATTACAAGTCGTATTTACAGTTTCACTTAAAGCGTCATTTGAAAACCCACAGCGATGAAAAGCCATATAGCTGTACGGTATGTAATTACAGCTGCAAAGATAAGTACCAACTTGCAGGTCATTTAAGGACGCACACTGGCGAAAAACCGTATAAATGCACCTTTTGTGACTATAAATGTGCGCATAAATCGCAGTTAAATCGTCATACCACAATTCACACGGGTAATCTACCATACAGTTGcgatatatgtgattataaatgcagTCAGAAACACCGCTTAAGGAGTCATTTAAAAACTCATGCAGTGAAAAGGGAGTTTTGTTGTGCTTCTTGTAATTATAAGTCTAACAAAAAATCACAGCTGATTCTACATTTGAAAACGCATAGGACTGTAACGTGTGTAAAAGAAGAACCTAATGATAGGATTGAGTGTATTAAATTAGAAGTTAAATCGGAGCAACTGGAATTTGTAGAAAAGTTCGAAAGCAAATAg
Protein Sequence: MNLVEEVNNKGVTSSSIIKQETDEISGYALAHIKEEELDIKEEPTNAEETIDTILINLIDSKQDETLKKTNRTMPYECHSCSRTFSTKTTLNYHLRKHTGEKLLHCTICNYKCSKRSRLIIHNRTHTGEKPYNCNICDYKCVQRNYLTKHMQTHFKEESTNVDGTKGSTSSNIIELKQDEHAGEANQTMRYECHSCSRTYSTKATLIYHMRIHTGEMPLQCTICDYKCNTKYQLKVHNSKHTGEKPYNCNICDYKTSEKHRLTDHMKVHTGEKPFNCTSCDYRSNKKSHLIDHIRTHTGERPFSCNLCDYTCSQKVQLTYHLKTHSEAKPLRCTICNYSSVQEKLLKCHMRMHCGERPYSCTICNKSFIQESKLSYHLTTHTGEKPYSCTMCDYSCRDKYQLTYHLKTHTGEEPYRCTFCEYKSSLKSRLQKHLRIHTADRPYSCNICDYKSYLQFHLKRHLKTHSDEKPYSCTVCNYSCKDKYQLAGHLRTHTGEKPYKCTFCDYKCAHKSQLNRHTTIHTGNLPYSCDICDYKCSQKHRLRSHLKTHAVKREFCCASCNYKSNKKSQLILHLKTHRTVTCVKEEPNDRIECIKLEVKSEQLEFVEKFESK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -