Ccup009746.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ctenicera cuprea
Gene Symbol
-
Assembly
GCA_958336395.1
Location
OY284487.1:228998-230989[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 9.2e-05 0.01 17.9 2.2 1 23 229 251 229 251 0.96
2 11 1.9e-06 0.00021 23.2 4.6 1 23 257 279 257 279 0.99
3 11 0.0019 0.21 13.8 1.9 1 23 287 309 287 309 0.94
4 11 0.00047 0.052 15.6 2.3 1 23 315 337 315 337 0.98
5 11 0.00016 0.018 17.1 0.6 1 23 346 368 346 368 0.96
6 11 3.9e-06 0.00044 22.2 0.2 1 23 374 396 374 396 0.96
7 11 7.4e-06 0.00083 21.3 1.1 1 23 402 424 402 424 0.99
8 11 5.8e-06 0.00065 21.6 1.4 1 23 430 452 430 452 0.99
9 11 0.00061 0.068 15.3 0.5 3 23 460 480 459 480 0.99
10 11 2.3e-05 0.0026 19.8 0.8 3 23 488 508 486 508 0.98
11 11 1.6e-07 1.7e-05 26.6 1.0 1 23 514 536 514 536 0.99

Sequence Information

Coding Sequence
atggaaaatattgagtataattttgaaactatatgCAGAACTTGTTTATCCAGGGATGCATGTATGAAATCCGTGTTTTCAGTGCACATCGCAGATACTCATTTAGTGCGTGTAGTGGATTTTATACGCAGAATGACATCAATTAAGATTGCGAAAGGAGACGGCCTTCCAGAGAATCTTTGCATGTGTTGTATTGAAACGCTGTGCAAAGCCTACACTTTTGCCCAACTTTGCATATCATCTGATAACTTCCTACGACTGCAACGCAAACGGCTTGCTTTACAGAACATCCAGAAcgagatatttgaaaatgagtCTATGTGTGAAGAAGAAAGTGATGAGATAACATGTATAGAGCAATCTACTGAAAGTTATGAAAATGGTAATGTTTCCAATAGTGAAAGTAGGAACACTCCAGAAGATTCGTTGAACGAATTTCCAGAAAACGAACAAACATTAACCAAATCCggttttaaaaatgacaaaaacgaaatattaattttaaaagaggaAAACGTACAGaatggaaaaatgaaatttgatgaaataatttttgacaatgaTTTCGAGGTAGTGCAGGAAGATGAAGTGGTTGAAAGTAAAGAAGACTTAAAAGAAGAATCAGAAGAGAAGCTGCCACCACTAGAAGGTTACAAAAAGTTATTGAGAAATTATCAGCTCAAGTTTCAGTGTGAAGAATGTCACGAATCGTTTAGTACAAAGATTAGGCTTCAGAAACATGAGTTACTCCACGATTCTAGCAGGCCTTATCAGTGCCAAGAGTGCTTGAAGACGTTTTCAAAGAAGACACATTTAACCGTGCATATGCGCTCTCATGTTAAAGCAGAGGACAAACAGCATATTTGTGGGGTGTGTGGTCAGAAATTTGTGTACTCATACTTGCTCAAACAGCATAGTTATAAGCATACAGAAGAGAAGCCGTATCCTTGTTCCAAATGCAACAGAGGCTGTTTGACCGCCGAAAGTTTAAGACGTCACATGAAAACACACGAAGAGaattacaagaaaaagaaacacATATGCTCGGTGTGTTCGAAAGAATTTCCATACCCTAGCTTTTTAGCGGAACATATGAAAAaccatactggagaaaaaccgttTTTATGTTCCATTTGTGGAAGAGGATTTCGGCAAAGTGGGGCATTAGAATACCACATTCGTTCACATACAGGATTTAAACCATACAAGTGCCAAGTTTGTAACAATAGTTTTTCGTCAAGagGGGTGTTGAGAGTTCATATGCGACGTCACACGAACGAGAGACCATATGTTTGTGATGTTTGTGGTATGGCTTTTCGACAGTCGACGGACATGAGAAGTCATCATCGGACACACACAGGAGATAAACGAATATTGTGCACTGTATGCGGAAAACGCATGTCTACAACTGGACAACTCACAGTGCATTTGAGATCGCACACTGGGGAAAAGCCGTTTGGGTGTGATGTTTGCCAAAAAGCATTTACTACTCGAACTATGTTGGTGAAACACCGCAGAATTCATACAGGAGAGCGACCGTATGTTTGTAACATTTGTAGCCGGGCTTTTAACCAAAGCAGTACATTAAAGACACACATGATGACACACCGAAAGAATAATGTAAAATCTGCTGGTGGTGTTGCAAATGTAGTTATGCAAAAAGTGATAATTTATGATGTTAAAAAACAGGAGAGTGTCGTCACTGAAAATAGCgagatagaacaaaaaaaagatGTTAAGGCTGATAATGTCATTTTGCCTGCACCCATTCCAATGGTTTAA
Protein Sequence
MENIEYNFETICRTCLSRDACMKSVFSVHIADTHLVRVVDFIRRMTSIKIAKGDGLPENLCMCCIETLCKAYTFAQLCISSDNFLRLQRKRLALQNIQNEIFENESMCEEESDEITCIEQSTESYENGNVSNSESRNTPEDSLNEFPENEQTLTKSGFKNDKNEILILKEENVQNGKMKFDEIIFDNDFEVVQEDEVVESKEDLKEESEEKLPPLEGYKKLLRNYQLKFQCEECHESFSTKIRLQKHELLHDSSRPYQCQECLKTFSKKTHLTVHMRSHVKAEDKQHICGVCGQKFVYSYLLKQHSYKHTEEKPYPCSKCNRGCLTAESLRRHMKTHEENYKKKKHICSVCSKEFPYPSFLAEHMKNHTGEKPFLCSICGRGFRQSGALEYHIRSHTGFKPYKCQVCNNSFSSRGVLRVHMRRHTNERPYVCDVCGMAFRQSTDMRSHHRTHTGDKRILCTVCGKRMSTTGQLTVHLRSHTGEKPFGCDVCQKAFTTRTMLVKHRRIHTGERPYVCNICSRAFNQSSTLKTHMMTHRKNNVKSAGGVANVVMQKVIIYDVKKQESVVTENSEIEQKKDVKADNVILPAPIPMV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-