Ccup039971.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ctenicera cuprea
Gene Symbol
Bcl11b
Assembly
GCA_958336395.1
Location
OY284493.1:4108396-4116324[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.017 1.8 10.8 2.1 1 23 114 136 114 136 0.98
2 16 2.6e-05 0.0029 19.6 2.0 1 23 142 164 142 164 0.98
3 16 1.3e-05 0.0015 20.5 0.8 1 23 170 192 170 192 0.97
4 16 0.0011 0.12 14.5 4.3 1 23 198 220 198 220 0.98
5 16 1.7e-06 0.00019 23.3 2.3 1 23 226 248 226 248 0.98
6 16 0.00054 0.061 15.4 0.4 2 23 255 276 254 276 0.97
7 16 4.1e-06 0.00046 22.1 2.5 1 23 282 304 282 304 0.98
8 16 0.74 83 5.6 5.5 1 23 310 332 310 332 0.97
9 16 0.019 2.1 10.6 1.6 1 23 338 362 338 362 0.96
10 16 1.7e-06 0.00019 23.3 1.5 1 23 368 390 368 390 0.98
11 16 0.002 0.22 13.7 6.2 1 23 396 418 396 418 0.98
12 16 8.5e-05 0.0095 18.0 4.0 1 23 424 446 424 446 0.97
13 16 0.19 22 7.4 4.7 1 23 452 474 452 474 0.97
14 16 0.00018 0.02 16.9 3.7 1 23 480 502 480 502 0.98
15 16 6.8 7.6e+02 2.5 0.0 9 23 703 717 701 717 0.93
16 16 0.015 1.7 10.9 0.3 1 23 723 745 723 745 0.97

Sequence Information

Coding Sequence
ATGGACATAAAACCAGAATTAACGGACTGTGCATTTGACGAAAACCAAGCAGTTAGTTATATAGAGAGCTCGTATAACCTAGAAGATGGCATGCAAGACTCTAACTTCACTTACACCACTTCGATCAAGCAAGAAGTTATTGACGATTTAAACTGTGACGCACCTTCAGTTAAACAAGAGGAACTAGacataaaaaacgaaaacgaaTGCAGTGAAGATTTAGTTTTCGATACGGTTATAATAAAGCAAAGTATTTCCGATGATGATAGTCCATCAACCGAGCCAAACGCACCAAGAATAAAAGTTTGTTACACTGGTGCCCCTGAAAATAAGAAGATGTTTAGTTGTAGCACTTGCAATTATAAATCTTCCATGCAGGCCAATGTAATTCGGCATTTTCGAAaacatactggagaaaagccatttacTTGTGGCATCTGCAACAATAAATTTACCCAGAAGAAGTCTTTGAATCAGCACCTTCTAAcccatactggcgaaaaaccatTTGATTGCTCTTTGTGTAACGCGAAATTCTCGTCGAAAAGCAGCCTAACTATACACGTTCGTATGCACACGGGTGAAAAGACGTACAACTGTACCTTTTGCGATTATACAACCCCTCAGAAAGGACATTTTAATTATCATCTGCGAACACACACTGGTGAGAAACCGTTTAATTGCACTTATTGTGGTTTGAAATTTGCTAGAAAAAGTAGCTTGAATTATCACATGCAACGTCACACCGAAGAAAAGATTCTTAGTTGTACGATTTGTGATAATAAATATGTTCGGATAACAGATTTAAAAATACACATTCGAAAACATTCAGGTGAAAAACCGTTTAGTTGTACATATTGTGATTCTAACTTTTCTAAGAAAAGTAACTTAACACAACATCTGAGGAttcatacaggtgaaaaaccattCAGTTGTAATTTCTGCgaatataaatgtttaaagaagGCAAACTTGGTTCGTCATTTTCGGAAACATAAGGCTCAAAAGCCGCATAGCTGTACATATGGCATCTGCAATGATAAATTTCCTGAAAAGACGTCTCTGACTCGGCACCTTCTAACCCACATTGCAAAAAAACCATTTAATTGCACCTTTTGTGGTGCTAAATTCTCGTCGAAAAGCAACCTAACAGTACATGTTCGTAGGCACACCGGTGACAAAACTTATAATTGTACTCATTGTGAATATACAACCGCTAAGAAAGGACATTTCAATAATCATCTCCGAACACACACTGGTGAGAAGCCGTTCGATTGCACTCATTGTAATTCTAAGTTTGCTACAAAAAGTAACTTGAATTATCACATTCAACGTCACACCGAAGAAAAGTCTTTTAGTTGTACGATGTGTGATAGTAAATTTGTTCGGAGAGTAGATTTAACATGTCACTTTCGAAAACATTCAGGTGAGAAACCGTTCAGTTGTGATTTCTGTGAATACAAATGTTCGCAGAAGGGAAGCTTGGTTCGTCATCTTCGGACACATTTAGTACAACACATAATGGAGATAAAACCAAAGTTAAGCGATTCTACATGTAATGAAAACCAAGCAGTTAACTATTTAGAGAGCTCACATCACATTGGAGATCACATCCAAGATTCCAGCTTTACCTACAACACGATCATTAAGCAAGAAGTTAATAAAGATTTTAACTGTAATGTATCGTCAATCAAACAAGAAGAATTAGACATAAAAGACGAGTACGATACATCCGAAGATCCAGTTTTCCAAACGATTAATATAAAGCAAGGTATGTTCGATGGCGACGAACCAGAACCACCTAGAATAAAAGAATACTACACTGGTCCTCCGGAAAACAAGAAGATGTTTGGCTGTACTATTTttCTTGAAAATTATCCTCACCTTTATTTGCTAAACATAATGGATATAAAAATAGAGTTAAATGACCCTGGATTTAATGAAAAGCAAGCTTTTGCGCCTTGCTCATATAACGGCTTAAAAGACACCCAAGAATTTGATTTCACTAACAACACAGTTGTTAAGCAAGAAGTTCATGACGTAAAATCGTACGTCCGACAAGATGAAGCAGACATAAAAGACGGATATGATAGCAGTGATGATCCAGTTTTCGAGACGAAGGCAAACTTGATTTGTCATCTTCGAAGACACACAGGTGAAAAGCCATTTAGATGTACTGTGTGTGATTCAAGGTTTTCTACAGGAAGTATTTTAGCAAAACATGTTCAGATTCACTCGGTGgatagaattgtttaa
Protein Sequence
MDIKPELTDCAFDENQAVSYIESSYNLEDGMQDSNFTYTTSIKQEVIDDLNCDAPSVKQEELDIKNENECSEDLVFDTVIIKQSISDDDSPSTEPNAPRIKVCYTGAPENKKMFSCSTCNYKSSMQANVIRHFRKHTGEKPFTCGICNNKFTQKKSLNQHLLTHTGEKPFDCSLCNAKFSSKSSLTIHVRMHTGEKTYNCTFCDYTTPQKGHFNYHLRTHTGEKPFNCTYCGLKFARKSSLNYHMQRHTEEKILSCTICDNKYVRITDLKIHIRKHSGEKPFSCTYCDSNFSKKSNLTQHLRIHTGEKPFSCNFCEYKCLKKANLVRHFRKHKAQKPHSCTYGICNDKFPEKTSLTRHLLTHIAKKPFNCTFCGAKFSSKSNLTVHVRRHTGDKTYNCTHCEYTTAKKGHFNNHLRTHTGEKPFDCTHCNSKFATKSNLNYHIQRHTEEKSFSCTMCDSKFVRRVDLTCHFRKHSGEKPFSCDFCEYKCSQKGSLVRHLRTHLVQHIMEIKPKLSDSTCNENQAVNYLESSHHIGDHIQDSSFTYNTIIKQEVNKDFNCNVSSIKQEELDIKDEYDTSEDPVFQTINIKQGMFDGDEPEPPRIKEYYTGPPENKKMFGCTIFLENYPHLYLLNIMDIKIELNDPGFNEKQAFAPCSYNGLKDTQEFDFTNNTVVKQEVHDVKSYVRQDEADIKDGYDSSDDPVFETKANLICHLRRHTGEKPFRCTVCDSRFSTGSILAKHVQIHSVDRIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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