Ccup041073.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ctenicera cuprea
Gene Symbol
-
Assembly
GCA_958336395.1
Location
OY284493.1:16959351-16962997[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00016 0.018 17.1 3.7 1 23 155 177 155 177 0.98
2 14 1.9e-06 0.00021 23.2 4.2 1 23 183 205 183 205 0.98
3 14 0.0041 0.45 12.7 2.6 1 23 229 251 229 251 0.97
4 14 0.0003 0.034 16.2 1.7 1 23 257 279 257 279 0.98
5 14 4.1e-05 0.0046 19.0 3.2 1 23 285 307 285 307 0.99
6 14 3.7e-05 0.0041 19.1 1.7 1 23 333 355 333 355 0.98
7 14 1.3e-05 0.0014 20.5 3.1 1 23 441 463 441 463 0.98
8 14 7.6e-06 0.00085 21.3 3.2 1 23 469 491 469 491 0.99
9 14 0.00041 0.046 15.8 3.1 1 23 512 534 512 534 0.97
10 14 4.5e-05 0.005 18.9 4.1 1 23 540 562 540 562 0.98
11 14 0.14 16 7.9 7.5 1 23 568 590 568 590 0.97
12 14 1.1e-06 0.00012 24.0 0.9 1 23 596 618 596 618 0.98
13 14 1.9e-06 0.00021 23.1 4.6 1 23 624 646 624 646 0.99
14 14 9.5e-05 0.011 17.8 1.3 1 23 652 674 652 674 0.98

Sequence Information

Coding Sequence
ATGAATATTGGTTATAACACAAATCCATTACTGgaagaaaattttcatataaaacaagAATGTGTAGAACCAACATTAGTTTATGCAACGACAGAACCGTTTGATGCTATCTATTTGGATGAATTTAAAGAATCATCAAGTGCTGTTGTAAATAATGCTTGTCAAGAATTGAGCAACACATTTAATACAGTAAAAGAGGAATCGTTTGATTCGACTACATTCTTTGAGTTGCAAGTGAAATCTGAAGCTGTGAACGAAAACAGTAATACtaatgaaaatgttagaaattcCGATCATGAATTAGAATCgcctttaattgaaaaattttgtataaaaactgAAGCTAATGGATCACACAACAATGAGGACTCGGAATTATATATGGAAAATTACCCAACAACATACAACtgtgaaatttatgaaaatgaatTAGAAGAAAATAACCATGTTGAAGGAAAATCATTCAATTGCAAAACCTGTTCTTACAAATCTTCAGACCGTAGTAACTTCCAACGTcacatgaaaattcatactggcgaAAGACCTTACGAATGTACAACATGTGGAAGAAAATTTTCTCAAAGCAGCCATTTGCAACAACATAAGAAAATTcatattgataaaaaatttaattgtgataatttttttaatggacgCACGAAAGTTCACACTGGAGAGAAGCCATACAAGTGTTTAATTTGCGGTTGTACATTTTCATTACGTACCCGTTTATTACGGCACAAAATAATTCATTCAGGCAGCAAGCCTTTTCAGTGTCAATTGTGTGAATACAAATCTGCAGACCAAAGCAATTTCCAGAGGCACACGAAAATTCACACTGGGGAAAAACCTTACGAATGTGTAGTATGTGCACGGAAGTTTTCACAAAGTTCTCATTTACAACAGCACAAGAAAACACATATTGGTGAAACGACTACTGATTATAAATTATCTTCACTACAATGCGACAGGAAGCTTCATATGGGAAATTTGCTGTACCAATGCTTAACATGTAACCGTAAATTTTCGCGAAGTATTCTTTTACAACGGCATGAAAAAATACACAACAGCAAAAAGGTTTCCTGTGCTAAACCTTTAGATCAAAACGATCTGCAACAACACAAACCTAAAAGTGAAATTGATGAAAAACCTTTAATAATAGATAAACTTTTACAAGAGAATAGGAAACTTAATAGTGGTGAAAAGTCTTCGGGTCAAAATGATCTTCAAAAACACATCAAAATTGAAACTGATGGAAAacctttaatattaaatatattgttaCAAGAGAATAGGAAACGCAATAATGGTGAAAAGTCTTTTGAATGTAAACTGTGCGACTATAAATCTGTACATCAAAGTAACCTGCAGCGGCATGTTAGAACTCACACAGGGGAAAAGCCTTACCAGTGTGTAATGTGTGGACGTAAATTTTCACAAAGTGGCCATCTACTACAACATAAAAAAACTCATATTGGTGATAAAAgatttgattataaaatgtttgaacgTGTATTTTTAGAAGAAAAGTTGCATGAATGTTCGATATGTGGATCTAAATTTTCACAACATGCTCAATTGGAACAACACAAGAAAATCCATATTCCGTTAAAACCTTTTAACTGTaaaatatgtgattataaatcttCCGACCATAGCAATTTTCAAAGACACATGAAAATCCACAGTGGTGTAAAGCGCCACGAATGCTTGATATGTGGATGTAAATTTTTGCAGAGCAATCACCTGCAGCAGCATAagaaaactcacactggtgagAAACCATTTAACTGTGaagtatgtgattataaatcttCGGATAGAAGCAATCTTCAGAGACATATGAGAATTCATAGTGGTGAAAGACCTTATCAGTGCACAATATGTGACCGAAAATTTACCCAAAGTAATCATTTACAACAGCATACGAACACGCATACTGGAGCAAAACCTTTCAAGTGTAGTTTGTGTAATAAAACCTTTATTTCGAGATATAAATTGGGTGTGCATGCGAATACTCATAGTGAAGAAAAGCCCCATCAATTAAATGGAAAGGGTACTAAGGAAAAACGAATAATAATTCACGGTGTAGATGAGGGAGAATGCGATCTgcaactaaaagaaaaaatgagaaTAATAATGAGAGATATGAATGTAAAGATAGAAATAGAACAAGAGGTAAACGAGAttagaaaaattggaaaacggACAAGTAACAAAGGGAGGCCAATAATGATAGAATTAAGAAATTGGACAAAGAAGTTAGAGATATTAAAAGCGTCAAGGATGTTAAAagggaaaaatatatatattgaaGAGGATTTCTCAAGGGCAATCCAAGAACAAAGAAAGGAATTGGTCCAATTCAAAAAAGTGATTCAGTCAAAAGGAAATCTCGTAACGATCCGGTATAACAAATTAATAGTAAATGGAGAGTGGTATTCCCTTGAACAATTGAAGGCAGTAGGAATACAAGACTTCAGTAAAGGAGTAGAAAAAGTAGTTGAAGTGGATGCTGTAAAGGAAGCAAGCAGTAACTGGAACATACACTCAAAGGAAACCGAGAGAGCCTCCACAACGCAGGAAAATCAACAAGATGAAATGAGGTACATGAAAAAAGGCAGAACTCTAAGTCAAAGATCACCAGGAAACAAGCAGGACGAAACACTAAGTGAGAAACTGCTTAAGATAACGAAAACGGACCGCTCTTCAAAAAACTAA
Protein Sequence
MNIGYNTNPLLEENFHIKQECVEPTLVYATTEPFDAIYLDEFKESSSAVVNNACQELSNTFNTVKEESFDSTTFFELQVKSEAVNENSNTNENVRNSDHELESPLIEKFCIKTEANGSHNNEDSELYMENYPTTYNCEIYENELEENNHVEGKSFNCKTCSYKSSDRSNFQRHMKIHTGERPYECTTCGRKFSQSSHLQQHKKIHIDKKFNCDNFFNGRTKVHTGEKPYKCLICGCTFSLRTRLLRHKIIHSGSKPFQCQLCEYKSADQSNFQRHTKIHTGEKPYECVVCARKFSQSSHLQQHKKTHIGETTTDYKLSSLQCDRKLHMGNLLYQCLTCNRKFSRSILLQRHEKIHNSKKVSCAKPLDQNDLQQHKPKSEIDEKPLIIDKLLQENRKLNSGEKSSGQNDLQKHIKIETDGKPLILNILLQENRKRNNGEKSFECKLCDYKSVHQSNLQRHVRTHTGEKPYQCVMCGRKFSQSGHLLQHKKTHIGDKRFDYKMFERVFLEEKLHECSICGSKFSQHAQLEQHKKIHIPLKPFNCKICDYKSSDHSNFQRHMKIHSGVKRHECLICGCKFLQSNHLQQHKKTHTGEKPFNCEVCDYKSSDRSNLQRHMRIHSGERPYQCTICDRKFTQSNHLQQHTNTHTGAKPFKCSLCNKTFISRYKLGVHANTHSEEKPHQLNGKGTKEKRIIIHGVDEGECDLQLKEKMRIIMRDMNVKIEIEQEVNEIRKIGKRTSNKGRPIMIELRNWTKKLEILKASRMLKGKNIYIEEDFSRAIQEQRKELVQFKKVIQSKGNLVTIRYNKLIVNGEWYSLEQLKAVGIQDFSKGVEKVVEVDAVKEASSNWNIHSKETERASTTQENQQDEMRYMKKGRTLSQRSPGNKQDETLSEKLLKITKTDRSSKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-