Basic Information

Insect: Ctenicera cuprea
Gene Symbol: -
Assembly: GCA_958336395.1
Location: OY284487.1:251970-257122[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1e-05 0.0011 20.9 3.1 3 23 171 191 169 191 0.97

2 12 6.5e-06 0.00072 21.5 0.3 1 23 197 219 197 219 0.97

3 12 0.0058 0.65 12.2 0.2 2 23 256 277 255 277 0.91

4 12 0.00092 0.1 14.7 5.0 2 23 289 310 288 310 0.97

5 12 8.4e-06 0.00094 21.1 0.2 1 23 316 338 316 338 0.97

6 12 2.7e-07 3e-05 25.8 1.9 1 23 344 366 344 366 0.98

7 12 8.5e-06 0.00094 21.1 0.4 1 23 372 394 372 394 0.95

8 12 0.00051 0.057 15.5 2.3 3 23 402 422 400 422 0.96

9 12 4.6e-06 0.00051 22.0 3.0 1 23 428 450 428 450 0.98

10 12 0.00018 0.02 16.9 0.8 1 23 456 478 456 478 0.99

11 12 4.2e-06 0.00047 22.1 1.1 1 23 484 506 484 506 0.98

12 12 1.3e-06 0.00015 23.7 0.9 1 23 512 534 512 534 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1e-05	0.0011	20.9	3.1	3	23	171	191	169	191	0.97
2	12	6.5e-06	0.00072	21.5	0.3	1	23	197	219	197	219	0.97
3	12	0.0058	0.65	12.2	0.2	2	23	256	277	255	277	0.91
4	12	0.00092	0.1	14.7	5.0	2	23	289	310	288	310	0.97
5	12	8.4e-06	0.00094	21.1	0.2	1	23	316	338	316	338	0.97
6	12	2.7e-07	3e-05	25.8	1.9	1	23	344	366	344	366	0.98
7	12	8.5e-06	0.00094	21.1	0.4	1	23	372	394	372	394	0.95
8	12	0.00051	0.057	15.5	2.3	3	23	402	422	400	422	0.96
9	12	4.6e-06	0.00051	22.0	3.0	1	23	428	450	428	450	0.98
10	12	0.00018	0.02	16.9	0.8	1	23	456	478	456	478	0.99
11	12	4.2e-06	0.00047	22.1	1.1	1	23	484	506	484	506	0.98
12	12	1.3e-06	0.00015	23.7	0.9	1	23	512	534	512	534	0.98

Sequence Information

Coding Sequence: atggaagaaaatatCTTATCAAATGTGTGTCGAGCTTGTTTGAGCGAAGAAGGTGAATTTCAATCTGTTTTTGTGCCAGATGAGAGCAGTGGCTTGACAATTCATGTAGCAGAAATGATTATGGCCTATGCCTCTGTACAgaTAACACTGGGAGATGGTCTACCGGAACAAATTTGCCTGCCTTGTGCGGAAAAAGCTGTTCATATGTATCTATTCAAGCAGCGTTGCGAAGAATCGGATGCTGCATTACGACTACAATTGGGTAAATCACCTTTGAACAAGACATACAGCATAGCAGAGGAGCAACGATTGGCAGTTGAAGCTCTAAATAATATAGACCCATACTCAATTGATGTTATTATTAAGCCGGAGATTGGTGTTGACAATGAGgaacaaaatcaaaatcacaTGCAAGCAATAGAACATGATTTCGATGACAGTTTTGAAGCAAGTGATGTTGGTTCTGATACAGAAGCAGtggaagttaaaaataaaattgaaacgatAGCTTGCGACATATGCCATAAAGTTTTCAACCGTGTTAGTCACTTAAATCGACATAAAAAAGTTCACGCAGTTCAAAAACAATTCTCATGTAATGTGTGTAATAAGACATTTGCGAGGAACGATGTACTTCTTCGTCATCAAGCCGTACACGAAGTTAAAATAGAAGAACAAATTTCACCATTTGAAACCATATTAGGCCAAGAGATAATCGCCGATAACTTGATAGAAGTGAAGTCGGAAGAAGTGATTACAGAGTTAAAGTGTGTGCCGTGcgataaattattttcaaataaagaagAATATAATACTCATATGGTGGTTCATGAACCAAAACCTAGAAATCTGCCAAGTTCATTGAGATGCGTTCAATGTCATAAAAAGTTCAATAAAGTAGCTCATTTAACTAGACACTTAAAAATACATGCGGCCATTAAGCCACATGTTTGTGAAATGTGCAATAAAGGGTTTGCACGTGCTGAACAACTTGTTAATCATATGAACGCACATTCGGGAATTAAACCACACGTTTGCACTATTTGTAATAAAGGCTTTAACcaagtttcaaatttaaaagatcaTATGCGGACGCACAATGGGGAAAAACCATTTTTGTGCTCAATTTGTGGGAAAGGCTTTAATCAGTTGGGAAATTTACGCCAACACACAATACGACACAGCGGGATAAAAGCACATCTTTGTAGTACATGCGGAAACGGTTTTGCAAGTAAAGGTGAACTCTGCGCACATCTCCGTAAACATACAggtgcAAGACCGTTTGTCTGTCAAATTTGCAATCATGGTTTTACAACGTCAAGCTCATTGACAAAACACAAACGTATTCATTCTGGAGAAAAACCATATGAATGTGAAGTGTGCAAAATGAAGTTTTCTCGGTCGGGAATTCTTGCCCGGCACAAACGCACTCACACAGGTGAAAAACCATACGTATGTAAATTCTGTACAAAAGCATTCTCACAGTCCAACGATCTCAGTTCACATTTACGCATACACACAGGGGAGAAGCCCTACATTTGTGATACTTGTGGACAAGCTTTCAGACAGAGTTCGGCTCTTAAAACTCATAAAAAGACCCACATAGATCGTGCTTCGATTCTTGAAATTGAGCGGGCAAGAAATCTTGTACCGATGATTCACATAACAACAAGCAGTAGTTATGAAATCCGAAGAAACAGAAGAGACTTACGCAAACAAGGTGAAGCTATTTCCAGTAATAGCAACGATAATGAGATAGAAGAAATGAACGACGACGGTAAGTCAAAAGAAGATGCGGATGAACAAACAACATCTTCACATAGACATGAAGATGAATCTAATTTGGTGGAAGAAAAACGATGCAGTAGCAGATACAAAAGATTTTCAGCAAAACTCAAGGATTATTTGCTGACGCATtaa
Protein Sequence: MEENILSNVCRACLSEEGEFQSVFVPDESSGLTIHVAEMIMAYASVQITLGDGLPEQICLPCAEKAVHMYLFKQRCEESDAALRLQLGKSPLNKTYSIAEEQRLAVEALNNIDPYSIDVIIKPEIGVDNEEQNQNHMQAIEHDFDDSFEASDVGSDTEAVEVKNKIETIACDICHKVFNRVSHLNRHKKVHAVQKQFSCNVCNKTFARNDVLLRHQAVHEVKIEEQISPFETILGQEIIADNLIEVKSEEVITELKCVPCDKLFSNKEEYNTHMVVHEPKPRNLPSSLRCVQCHKKFNKVAHLTRHLKIHAAIKPHVCEMCNKGFARAEQLVNHMNAHSGIKPHVCTICNKGFNQVSNLKDHMRTHNGEKPFLCSICGKGFNQLGNLRQHTIRHSGIKAHLCSTCGNGFASKGELCAHLRKHTGARPFVCQICNHGFTTSSSLTKHKRIHSGEKPYECEVCKMKFSRSGILARHKRTHTGEKPYVCKFCTKAFSQSNDLSSHLRIHTGEKPYICDTCGQAFRQSSALKTHKKTHIDRASILEIERARNLVPMIHITTSSSYEIRRNRRDLRKQGEAISSNSNDNEIEEMNDDGKSKEDADEQTTSSHRHEDESNLVEEKRCSSRYKRFSAKLKDYLLTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00978617;
90% Identity: -
80% Identity: -