Ccup050960.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ctenicera cuprea
Gene Symbol
-
Assembly
GCA_958336395.1
Location
OY284495.1:38604765-38608355[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.015 1.7 10.9 0.2 1 23 149 171 149 171 0.98
2 20 1.7 1.9e+02 4.4 0.2 1 23 175 197 175 197 0.83
3 20 5.3 5.9e+02 2.9 3.0 1 23 203 226 203 226 0.89
4 20 0.0034 0.37 13.0 3.2 1 23 232 254 232 254 0.98
5 20 0.0023 0.26 13.4 0.4 1 23 260 283 260 283 0.92
6 20 0.00052 0.058 15.5 1.9 2 23 292 313 291 313 0.97
7 20 3.4e-06 0.00038 22.4 0.9 1 23 318 340 318 340 0.98
8 20 0.0001 0.011 17.8 2.7 1 23 346 368 346 368 0.98
9 20 4.5e-05 0.0051 18.8 1.6 1 23 374 396 374 396 0.97
10 20 0.02 2.2 10.5 0.0 3 23 525 545 523 545 0.95
11 20 0.00055 0.062 15.4 1.3 1 23 565 588 565 588 0.96
12 20 0.0036 0.4 12.9 3.2 1 23 593 616 593 616 0.90
13 20 0.35 39 6.6 1.6 1 23 622 644 622 644 0.91
14 20 0.00013 0.015 17.4 1.2 1 23 650 672 650 672 0.98
15 20 0.00074 0.083 15.0 0.9 1 23 678 701 678 701 0.97
16 20 8.9e-06 0.00099 21.1 1.8 2 23 713 734 712 734 0.98
17 20 0.00028 0.032 16.3 1.7 3 23 742 762 741 762 0.98
18 20 5.1e-06 0.00057 21.8 0.4 1 23 768 790 768 790 0.97
19 20 1.7e-05 0.0019 20.2 2.9 1 23 796 818 796 818 0.97
20 20 0.0062 0.69 12.1 0.0 1 21 824 844 824 845 0.94

Sequence Information

Coding Sequence
ATGCTTAGTTTAAAACCCTTTGCCAAACTTACTAATATGGAAGACACCGCAACAGAACCAAAAACTAATTTAGAGCGAGTGGCCAACGTAAAAGTAAAAGAAAGCCGTTCCAAAAAACTCGTTACCAAAGAGAACGAAGATAGTGTTCGAAACTCTCATCGGACACcgcataaaaataaaagtagtgttaaAAGTAAGCGTAACAAAACTCTTATTACTAAAAGGACAAGTACACGTACTAAAATCGATCAGTCTATTGAGAAAAAAGAGGAACAAGAAGAAAAACCAATGTATTACTGTCATGTTTGTAAGAACAACAAGAAGATAACTAGGCGAGAGTTAAAGGAACACTGTTTGCGCCATAATATGCCAGACGCAGTTCATTCTCggcaattttttatgaaatcacgAGCAAAACAAAATCGCGTTACAAAACCACCATTGTACAAGTGTGAAGTCTGTTCTGACAATTTTCCAAATCAGACAGAGCTAGATGAGCATTTACAAAATCACGAGGATCAATTCATTTGCGAAATTTGTAACGTCGGATTTAAAAAGCTTATCGATCACGTGATTCACGTGCAGGTGCACAGCGAAGATAAACTGTTTCGATGCCCACTGTGCCACGTTACTGcaaataaacattattacatTAGATCACATTTATATGCTCAACATGAACAGTTTAAGAAGTATAAATGTGATGTTTGTAGTAAAGGTTTTTCAATTTACTCCCATTTTGAGGAACATAAAAATTACCACACCGGAGAGAAGCCCTTTCAGTGTGATATTTGTGGTCTTAGATTTATGTACACGCGTTATTTGAATGCGCACAGGGTGCAAGCACACACGGAAGTTGGACAGAAAGGCGTAGAGTGTTCAGTTTGCAAGAAAATGTACAAGAGTAAAAAGAGTTACTATACCCATATAAAATCCCACGATGATGTTAGTTATATGTGTGATTTTTGTGGAAAAACATTTGTAACTAGACAAGCTCTCAAAGTACACCAAAAGCTTCACGATGACAGTAGACCGTATAAGTGCAAGTATTGCGATAAGAGTTTTAAACACAGCGGTGCTAAAGTGGACCACGAGAGAATCCACACAGGTGAGAAACCGCACAGGTGTCCAGATTGCGGAAAAGGTTTCATTCAACGAACTAGTATGGTTCGACATTCAAAAAGCCATGGTGCCATTCTGCAGAGAGTTCTAGAAACGGATAATATTTGTTCTTATAGagaGTCTACTCTCAACAAGAATTTAGAATCGTTAGCGACAATCAGCGCACTGTTTGCTACCTCAAAAGAAAACTGGTCGAATCGATTACCGGAAATCGATATAATTCCGGTATTGAAGCAAGAAGAACCTGCTTACACGCTTCCAGACATAACGATATATAATTTCAAGAAAGAAGGAAATGCCAAGAAAtcgattaaaaagaaaattttaaaaaaaggcaaACGTAGCCTGGCAGATTTGGGTTATAAAAATCCCTTTGTCTACACTAATTGCACTTCtttaaaaaagaacaaagaaattaaacaatttgaagtTAACAGTAACAAATGGGCTTGTATGATCTGCAACGAAGTCACTGTTGACAAGGAAAGCTTGATTAATCACTACGAGCAgcacaaaaatgaaaaagaagGTAAGGCGGAACAAGTACAGGCTCAAAACATCGAAGACTATTTCAAATGCGTGGTATGTACTCGAGAATTCACATCGTCGAGAAGCTACGAAAAGCATTTGGAAGTTAAACATGGAGAGAATCGTTATGCATGCGAGCAGTgcaataaaacatataaaaattcgtTTCAATTATGCATTCACAATTTTAGTGCACATACAACTGATGGAAGGTACAAATGTATTGCCTGTGATTTTAATACCGTACACAGAGCTTCGTTGAAGTCTCACATCCAAAGACACGAGAACGATTACAGATTTCAGTGTGATATTTGcgataagaaattttttacagcaACTTGGTTCGAAGAACATAAAAATTCACATACTGGTGCAATGCCTTTTCAGTGTGAAATTTGTATGAAGAGCTTCCCGTACTCGCGATATTTAATTGCTCACAAAAAGAGCATGCATCCGCAAATATATTCGGGCACACCGGCCGTCAACAAGTGCGATATATGCGGAAAACAGTTTGCACACAAAAAGAGTTTGATTTTGCACATCAAATCGCACACAGGAGAAAACACTGTACTTTGCGATATGTGTGGAAAAAACTTATCAAGCACGGAACATCTCAAGCAGCATTTACGCATCCATACTGGTTACAAACCACACGTTTGTGCTGTTTGTGGAAAAGGTTTTGCTAAAAAGAGCAACCTAACTTTACACGAACGAGTGCATAGCGGAGAAAAACCGTACATTTGTAGAAACTGtggaaaatgtttttctcaGCGTTCGACTCTGGTTATTCACGAGCGATATCACTCTGGTGAAAGACCGTATACGTGTCCATTATGCAATAAAGGTTTTGTAGCTAAAGGACTGTTGGGGGTTCACCTTAAAAGTTGCTCCAGAATTCCGCAATAG
Protein Sequence
MLSLKPFAKLTNMEDTATEPKTNLERVANVKVKESRSKKLVTKENEDSVRNSHRTPHKNKSSVKSKRNKTLITKRTSTRTKIDQSIEKKEEQEEKPMYYCHVCKNNKKITRRELKEHCLRHNMPDAVHSRQFFMKSRAKQNRVTKPPLYKCEVCSDNFPNQTELDEHLQNHEDQFICEICNVGFKKLIDHVIHVQVHSEDKLFRCPLCHVTANKHYYIRSHLYAQHEQFKKYKCDVCSKGFSIYSHFEEHKNYHTGEKPFQCDICGLRFMYTRYLNAHRVQAHTEVGQKGVECSVCKKMYKSKKSYYTHIKSHDDVSYMCDFCGKTFVTRQALKVHQKLHDDSRPYKCKYCDKSFKHSGAKVDHERIHTGEKPHRCPDCGKGFIQRTSMVRHSKSHGAILQRVLETDNICSYRESTLNKNLESLATISALFATSKENWSNRLPEIDIIPVLKQEEPAYTLPDITIYNFKKEGNAKKSIKKKILKKGKRSLADLGYKNPFVYTNCTSLKKNKEIKQFEVNSNKWACMICNEVTVDKESLINHYEQHKNEKEGKAEQVQAQNIEDYFKCVVCTREFTSSRSYEKHLEVKHGENRYACEQCNKTYKNSFQLCIHNFSAHTTDGRYKCIACDFNTVHRASLKSHIQRHENDYRFQCDICDKKFFTATWFEEHKNSHTGAMPFQCEICMKSFPYSRYLIAHKKSMHPQIYSGTPAVNKCDICGKQFAHKKSLILHIKSHTGENTVLCDMCGKNLSSTEHLKQHLRIHTGYKPHVCAVCGKGFAKKSNLTLHERVHSGEKPYICRNCGKCFSQRSTLVIHERYHSGERPYTCPLCNKGFVAKGLLGVHLKSCSRIPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-