Ccup031798.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284491.1:14616424-14618756[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00039 0.044 15.9 1.3 1 22 228 249 228 252 0.91 2 15 4.4e-05 0.005 18.9 2.7 1 23 258 280 258 280 0.96 3 15 0.15 17 7.7 1.8 5 21 324 340 313 341 0.81 4 15 0.0027 0.3 13.3 5.2 1 23 350 372 350 372 0.98 5 15 0.036 4.1 9.7 4.2 1 22 406 427 406 430 0.90 6 15 4e-06 0.00045 22.1 2.8 1 23 436 458 436 458 0.96 7 15 4e-05 0.0045 19.0 1.9 1 23 464 486 464 486 0.98 8 15 0.00016 0.018 17.1 0.7 1 23 492 514 492 514 0.97 9 15 0.00012 0.013 17.5 5.8 1 23 520 542 520 542 0.96 10 15 3.3e-06 0.00037 22.4 1.2 2 23 559 580 558 580 0.98 11 15 8.1e-05 0.009 18.0 0.2 1 23 585 607 585 607 0.95 12 15 1.2e-05 0.0014 20.6 0.1 1 23 613 635 613 635 0.98 13 15 2e-05 0.0022 19.9 3.5 1 23 641 663 641 663 0.98 14 15 5.7e-07 6.3e-05 24.8 0.6 1 23 669 691 669 691 0.99 15 15 1.9e-05 0.0021 20.0 3.2 1 23 697 719 697 719 0.98
Sequence Information
- Coding Sequence
- ATGGATTATAATTTGGCAAGTCTCGAAAAATCAAGCAAACCATTTTTATTAACTACACCCTTCGACCGAATTTGTAGAACctgtttaattttacaattggAAGAACAAATCTTCAATATATTTGAGGAAACTCATGAAGATATTACATTAGataaaatttatgcaaattataTTTCAGTTGAGATCGAACAAAATGATGGCTTGCCGCAGAATATTTGTAAATCATGTATGATTGGTCTTGTGCAAATATATACTTTTGTACAACAATGTAAACAGTCTGACGCTTCATTGCGGGCAGTTATGTGTGAACGCAATAAAGACCCACCTATATCACAAATCAGTATAAAAGTAGATgctgttttagaaaaaacagaTAATACTAAAAAGTGGCTCCAAAACAATCGGTTGGATGAACATAATCAGGAAAATTCACCACACAATAATGAAACGGTATATCCTTTCCTAAGTCTTAACGAAAAAAAACCAGAAACTGTTAATAtctattctgaaaataaaataattaatgtatcCTCACCAAAATCCAAGCAATATGATAATTATGTTGATATAAAACATGAATTGGAACCTCAAATTTATATCAAACAAGAAAATCAGGATGAGTGTATCACAAACGCATCTCAACACACAGTTTCACTATTGAAGAAAATCCCCACATTTTGGTATTCATGCAATGACTGTAAAGAatcttttgaaacatttaatgaACTAAAACAACACCGAAACCTTGCGAAACATCCTCGACCACGTAATCATATAtgttcaaaatgtaaaaaggCATTTATATCTTTGGGACATTTGCAGCAACACATGGCAAGTCATGCAAGGAACATTCATTGCCAGAGTTCTAATGTTAAATCAGGGGAGGGCGATATAAAAAACGATTTAtcgaaacttttgaaaaatatattcgaGTCGGACAAATGTCATACTACTGTGTATTCAAGCCaaaagtgcaataaaatatttggttcGCATAATGAATTAAAAACGCATCGGAGGCAAGGAAAACGTAGCCAGCCATGCAATTATGTGTGTTCGAAATGTTGCAAACCAGTTAAAACTTCTCATAATCTGAAACAACACATGAAGGTTCATGAGTTAgagttgaatttatattcatcCAATAATCAAAATGATGCAAAGATTGATGACTCTGTAGATAGTATAACAAATAATGATTCATCGAAGCTTCTACATTCTTGCAAGCAGTGTAATGAGTTTTTTTGTTCGTATAATGAACTGAAGTTACACTGGAAACAAGTTGCACATCCTCACCCACGCACCCATGCATGTTCAGAATGTAAAAAGTCATTTATATCTAATAGTAAATTACAACAACATGTGAGAACTCACACGAAAGAAAAACCGTACAGTTGCCATATTTGCCAAATGCAATTTTCTGCTAGTGGTAGTTTACGACGACATATGATGCAGCATACGGGTGAACGACCTCATGTATGCGAATTTTGTGGCAAAGGTTTCATCCAAACCGAAAGTCTTGTAGAACACAGGCGGTTACACACTGGCGAAACTCCATTTGAGTGCAACTACTGTGGAAAGTGCTTTAAACACAGAATAAGTTATAAAACACATTTAGAAGGacatttcattaaaagtacTTCTGCAAATAGCGACAACGGAATCCTGAATAACCAATGTGATATATGCCAGCGACGATTTACAACAAAAGCGACATTAAAAACGCATATGTTAATACATGGAGAgaaaaagtttctttgcaaCCAGTGTGGtaaaggttttgttttaaaaggtgGTTTGTTGACGCACATGAAAGTTCATACCGGTGATAAACCATACGCTTGCAAAGAATGCAACAAAGCATTTTCTCAGATTGGTGCTTTGAAGTCACATGCGCGCattcatacaggagaaaaaccatttgtttgcaaattgtgCCCTAAAGCTTTCACAATATCCCATCATCTTGTGTACCACATGAGAACACACAGCAAAGAAAAGCCTTTTAAGTGTTCATATTGTGGTAAACTTTTTGCATTTAAGGCAAATCTCACCGTTCATATACGGATTCACACTGGAGAAACTCCATTTGTCTGCAGTATTTGTGGTAAAGGATTTTATCATTCTAATAAtatgaaaaaacacaaaaaagtgcaTGAAAAGTTAAACGTAAAAGCTTTAGCTGAAGTGGTTACAATACCACTATGA
- Protein Sequence
- MDYNLASLEKSSKPFLLTTPFDRICRTCLILQLEEQIFNIFEETHEDITLDKIYANYISVEIEQNDGLPQNICKSCMIGLVQIYTFVQQCKQSDASLRAVMCERNKDPPISQISIKVDAVLEKTDNTKKWLQNNRLDEHNQENSPHNNETVYPFLSLNEKKPETVNIYSENKIINVSSPKSKQYDNYVDIKHELEPQIYIKQENQDECITNASQHTVSLLKKIPTFWYSCNDCKESFETFNELKQHRNLAKHPRPRNHICSKCKKAFISLGHLQQHMASHARNIHCQSSNVKSGEGDIKNDLSKLLKNIFESDKCHTTVYSSQKCNKIFGSHNELKTHRRQGKRSQPCNYVCSKCCKPVKTSHNLKQHMKVHELELNLYSSNNQNDAKIDDSVDSITNNDSSKLLHSCKQCNEFFCSYNELKLHWKQVAHPHPRTHACSECKKSFISNSKLQQHVRTHTKEKPYSCHICQMQFSASGSLRRHMMQHTGERPHVCEFCGKGFIQTESLVEHRRLHTGETPFECNYCGKCFKHRISYKTHLEGHFIKSTSANSDNGILNNQCDICQRRFTTKATLKTHMLIHGEKKFLCNQCGKGFVLKGGLLTHMKVHTGDKPYACKECNKAFSQIGALKSHARIHTGEKPFVCKLCPKAFTISHHLVYHMRTHSKEKPFKCSYCGKLFAFKANLTVHIRIHTGETPFVCSICGKGFYHSNNMKKHKKVHEKLNVKALAEVVTIPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -