Ccup041163.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ctenicera cuprea
Gene Symbol
-
Assembly
GCA_958336395.1
Location
OY284493.1:17963636-17972573[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 7.1e-05 0.0079 18.2 1.0 2 23 121 142 120 142 0.97
2 17 1.7e-05 0.0019 20.2 3.7 1 23 148 170 148 170 0.98
3 17 0.0037 0.41 12.8 7.4 1 23 176 198 176 198 0.98
4 17 0.00028 0.031 16.3 3.0 2 23 205 226 204 226 0.97
5 17 8e-05 0.0089 18.1 6.8 1 23 232 254 232 254 0.99
6 17 0.0011 0.12 14.5 9.4 1 23 260 282 260 282 0.99
7 17 1.5e-06 0.00017 23.5 3.8 1 23 288 310 288 310 0.99
8 17 0.0045 0.5 12.6 0.4 1 23 446 468 446 468 0.97
9 17 0.0016 0.18 14.0 3.6 2 23 475 496 474 496 0.97
10 17 4e-06 0.00045 22.1 3.7 1 23 502 524 502 524 0.98
11 17 0.00073 0.081 15.0 0.6 1 23 530 552 530 552 0.98
12 17 1.8e-05 0.002 20.1 1.8 1 23 558 580 558 580 0.99
13 17 0.0027 0.3 13.3 2.7 1 23 737 759 737 759 0.98
14 17 8.2e-05 0.0092 18.0 1.5 1 23 765 787 765 787 0.97
15 17 0.0039 0.43 12.8 0.8 3 23 795 816 794 816 0.96
16 17 1.4e-06 0.00015 23.6 2.0 1 23 822 844 822 844 0.99
17 17 8.9e-05 0.0099 17.9 3.9 1 23 850 872 850 872 0.99

Sequence Information

Coding Sequence
ATGGGAGAAGCAGTAAAACGTGAAGTCACTACGGAAATCTCGTTACTTGCTACTGTTAATTCCACACCTGATGCTTCCCATCTAAacaaaatcaagaaagaattttcactCTCTGAACCAAATTTACATGGTGAATTTGTGGAATGTGCTGTTGTGAAAAGCGAAGAAACCAGCATTCAATCGTTGGAtcttgaaataaaattagaagtttcTGATTTGGAATGTAGTATCAACAGTGGTAATGGAGATAATCACATCAAGCTTGAGCCTTTGGTGATTGAAgagttggaaataaaaaacgaaGTTGAAAAACTTCATGAagttcaaacaataaaaaaggcAACCAAAGTTAAACACATTTATTGTGGTTTATGCAACAATAAATTTGCATCTGAGAGAAACTTACAGAAGCACATGAAAACGCATAGTGGAGAAAGACCTTTTAATTGCAATGTatgtaattttagatttatacaGAAGGGCGACTTACACCGACATATGAAGACTCATACAGAAGAGAAACCTTTTCATTGCACTGTATGTGCTTACAGGTGTATACGAAAGGATCACTTACgaatacatatgaaaactcatactggtgaaaaacctttaaaatgcagtatatgtgattatagatgtatacgaaaagattatttacgaaaacatgaaaaaattcatAGTGGTGAAAGGCCTTTCaagtgcagtgtatgtgattatagatgtatacacaGGAAggacttacaaagacatatgaaaactcatactggtgaaaaactgtttaaatgCAGTGTCTGTGATTACAAATGCATACATAAGTGtaacttacaaaaacatataaaaactcatacagTAGAAAAGCcgtttaaatgtagtgtatgtggtTATGGGTGTAAAACCAAGAGCAGCTTGcaaagacatataaaaactcataccgAAGAAAGATTAAAATGTTATCTAGGATATTTAACCGATACGAATTTTAAATCAAAGATGGAAAAAGAAGTAAAATCTGAAGTCACTAGTGAAAACTCGTTACTTGCTAGTGTGGATTCCAAATCTGATGTTCCCAGtctaaatgaaatcaagaaagaactTTCACTTTCTGAGCCAAATTTACATAGTGAACTTGTGGAATATGCTGCTGTTAAACACGAAGATGCAGATATTCAATCGCTGGATCTCCAAATAAAATTGGAAGTTCCTGCTTCGACATGTAATGTCAAGACTGCTAATGACAACATCCCTATCAAGCTTGAGCCTTTGATGATTAACGAGTTGGCTATAAAAGACAAAGTTCAAGAGAATCGTATAGATGAAACAATCATAAAGAAACCCTTTATTTGTGCTTCATGCAACAATGAATTTGCATCCATAAAAAGCTTGCAGCGGCATATGAATAATCATATTCaaataaaacctttaaaatgtacCGTTTGCGATTATACATGTTTACAAACAAGTAACTTACAAAGACActtaaaaactcatactggtgaaaaactttttaattgtaatgtttgtgattatagatgtatacagaaaagtaacttacagcgacatataaaaactcatacaggagaaaaaccttttaagtgtgGTATATGTGATTATATCTGTACGCAGAAAATTAGCTTAGAAGGACATATTAAAGCTCACACCggagaaaagccatttaaatgtagtgtatgtggtGATAGATTTATAAGAAAGAATACCTTACAACGACATATGACAACTCATATAGGACAAAAACCGTTAAAATGCAGTACCATTGGCCTGGTAACCCACACAGAACCAGTCATGTGCATCTCTTGTGTAAGTGCTCTACACTCGGCATACACCTTCAAAAATCAATGTCTTGAAACGGAAGAACACATCCGGAATTACATGCAACGAAAACATGTGGGAATTAATCTCAGCGAAGTAGTTCAAGAAAATAACTTTGTCTTAGTACCTAATTCTGAGAACACAGTAGAACCAATTAATTTTGCGGAAAATAGcacaaatatttatgttaaggAAGAATTTACTCCACCTGAAGAACCATTTGAAATAGCAGAAATTAAATACGACAACTTTACCACAGAAGGCGATTTACAAAACCTTTCAGAAGAACAGACGCAACAGAATTTAAATCTACATCAAAAAGAATTGCAAGATTTATTACGACAAAGATCGAAACAACCCAGATCTATGGCTGACAGGCCCCACAAGTGTGACAAATGTCCGTTTAGTACCGGTGACAGAAGTACTTTAACCAAACACAAAGCAACTCATAGTGAGGAAAGACCGTTTGCATGCACCATCTGTAGTTATCGCACTAAACGGAAAGACGCGTTAACATTACATATGAAACGGCACCGCGCTATAAAACCGAACATTTGTCCACAATGCAAATACAGTGCCGTTACTAAACAGTGCTTGCGCAGACACATCATGGTAGCCCACTTAGAATTGAGGCCATATAAGTGTGATCAGTGTCATTTAAGTTTTGCCGATCAGGGTACTTTAACTAAACATATGTTGACACATACAGATGCAAAGCCGTATAAGTGTAAGATGTGTGATTTCTCGACTAAGAGGAAATATACTTTATCGAATCATATAAAGAGTCATGGGAAAGGCACTATTTAG
Protein Sequence
MGEAVKREVTTEISLLATVNSTPDASHLNKIKKEFSLSEPNLHGEFVECAVVKSEETSIQSLDLEIKLEVSDLECSINSGNGDNHIKLEPLVIEELEIKNEVEKLHEVQTIKKATKVKHIYCGLCNNKFASERNLQKHMKTHSGERPFNCNVCNFRFIQKGDLHRHMKTHTEEKPFHCTVCAYRCIRKDHLRIHMKTHTGEKPLKCSICDYRCIRKDYLRKHEKIHSGERPFKCSVCDYRCIHRKDLQRHMKTHTGEKLFKCSVCDYKCIHKCNLQKHIKTHTVEKPFKCSVCGYGCKTKSSLQRHIKTHTEERLKCYLGYLTDTNFKSKMEKEVKSEVTSENSLLASVDSKSDVPSLNEIKKELSLSEPNLHSELVEYAAVKHEDADIQSLDLQIKLEVPASTCNVKTANDNIPIKLEPLMINELAIKDKVQENRIDETIIKKPFICASCNNEFASIKSLQRHMNNHIQIKPLKCTVCDYTCLQTSNLQRHLKTHTGEKLFNCNVCDYRCIQKSNLQRHIKTHTGEKPFKCGICDYICTQKISLEGHIKAHTGEKPFKCSVCGDRFIRKNTLQRHMTTHIGQKPLKCSTIGLVTHTEPVMCISCVSALHSAYTFKNQCLETEEHIRNYMQRKHVGINLSEVVQENNFVLVPNSENTVEPINFAENSTNIYVKEEFTPPEEPFEIAEIKYDNFTTEGDLQNLSEEQTQQNLNLHQKELQDLLRQRSKQPRSMADRPHKCDKCPFSTGDRSTLTKHKATHSEERPFACTICSYRTKRKDALTLHMKRHRAIKPNICPQCKYSAVTKQCLRRHIMVAHLELRPYKCDQCHLSFADQGTLTKHMLTHTDAKPYKCKMCDFSTKRKYTLSNHIKSHGKGTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-