Basic Information

Insect: Ctenicera cuprea
Gene Symbol: -
Assembly: GCA_958336395.1
Location: OY284495.1:23255335-23258335[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.3e-05 0.0014 20.6 3.6 3 23 122 142 121 142 0.98

2 13 0.0001 0.012 17.7 1.7 1 20 148 167 148 169 0.93

3 13 0.012 1.4 11.2 1.5 1 23 205 227 205 227 0.98

4 13 0.00029 0.032 16.3 2.4 1 23 233 255 233 255 0.98

5 13 1.3e-05 0.0014 20.6 2.4 1 23 261 283 261 283 0.97

6 13 0.00023 0.025 16.6 0.9 3 23 294 314 292 314 0.96

7 13 4e-05 0.0045 19.0 0.2 2 23 321 342 320 342 0.95

8 13 1.5e-09 1.7e-07 32.9 0.5 1 23 348 370 348 370 0.99

9 13 3e-07 3.4e-05 25.7 3.3 1 23 376 398 376 398 0.99

10 13 1.1e-05 0.0013 20.7 2.5 1 23 404 426 404 426 0.99

11 13 4.8e-05 0.0053 18.8 1.8 1 23 432 454 432 454 0.94

12 13 2.1e-06 0.00023 23.0 0.1 3 23 462 482 461 482 0.98

13 13 6.5e-07 7.2e-05 24.6 0.4 1 23 488 510 488 510 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.3e-05	0.0014	20.6	3.6	3	23	122	142	121	142	0.98
2	13	0.0001	0.012	17.7	1.7	1	20	148	167	148	169	0.93
3	13	0.012	1.4	11.2	1.5	1	23	205	227	205	227	0.98
4	13	0.00029	0.032	16.3	2.4	1	23	233	255	233	255	0.98
5	13	1.3e-05	0.0014	20.6	2.4	1	23	261	283	261	283	0.97
6	13	0.00023	0.025	16.6	0.9	3	23	294	314	292	314	0.96
7	13	4e-05	0.0045	19.0	0.2	2	23	321	342	320	342	0.95
8	13	1.5e-09	1.7e-07	32.9	0.5	1	23	348	370	348	370	0.99
9	13	3e-07	3.4e-05	25.7	3.3	1	23	376	398	376	398	0.99
10	13	1.1e-05	0.0013	20.7	2.5	1	23	404	426	404	426	0.99
11	13	4.8e-05	0.0053	18.8	1.8	1	23	432	454	432	454	0.94
12	13	2.1e-06	0.00023	23.0	0.1	3	23	462	482	461	482	0.98
13	13	6.5e-07	7.2e-05	24.6	0.4	1	23	488	510	488	510	0.98

Sequence Information

Coding Sequence: ATGAATTctatgttttacaattttaattcaatttgtcGAACATGTTTATCTGTAAACCAAGAATTAAAACCCATGTTTGAGTCAGGAGGGGCTACTATGTTGAACGAGTGTCAGTTTGTTGAGGTAGCACTTGAAGATGGGTTTCCCCctcatttatgtacaaaatgcCATGATGTCTtgctgcaaagttataatttcaaaaagctATGTAAAGAATCGGAAATAACATTGAAACGGTTAATGTCGGAGGATTTGAATGTAATGAAAGAAAAGGGTGGTGAAGATTCAGTTTCGGAAACTTTTGACGATTGTAATGAGCAGTATGAAAGTGAAACTCGTCTTCGAATAGCAGCCGAACAAGCTTGCACGCATTGTAGCAAAAAATTTCGCAgTTTACAAGCGCTAAGAAAACACATGAGAATACAtgtaagaaaaaagaaatttaattgtttagagTGTggtaaaacatttacaaatttagatGCTCTTAAAACCCACAAATGTAACATAAATCAAGAAAGtgaTAAAGAAGATTTACGATTCAATTTGAAATCTGATGTGTCAGACGATCTCACTGCATTTTTGGATGCAGCATCTCCTCCACCATTACCATTTCCATGTTCACAATGCACCCAGTCTTTTAATGCACAATGTGATCTCGATTTGCATTTATCTACACATTCGAAAAACGGAGAATTTATTTGTAGTCgttgtaaaaaacaatttgccacACGACAGGTGCTGAAAAGACACGTTAAAACTCATATGCTGCATAAACCGCACGTTTGTCGAGAATGTGGGAAAGGTTTTGCCGAGTCTCACGCACTTACAAAGCATCTGCGTAAACATACAGGACAGCCAAGGGAAAAGAAACATTTGTGTACTGTCTGTGGGCAAGgATATTCGgaaccattttatttaaatctacataTGAGAAAACACACCGGTGAGCGTCCACTTATGTGTTCGGCTTGTGGAAAATCATTTGCTGATCCTCGATCTTTGAAGGCACACAACATGACTCACACTGGCGAAAGGCCATACAAATGCAACATTTGCGGGAAAGCCTTCAGTCAGAgtgtaaatttaacaaaacacatCAGAGTTCACACTGGGGAAAAACCATACGTTTGCTCGGAATGCGGAAAATGTTTCACACAATCTTCAAGCCTTGATAAACATTCTCGAACTCATACAGGGGAAAGACCGTACCCTTGCGAACACTGCCCTAAAAGgttTGCCGAGAGAGGCACTTTGATCCATCACACAAGGACTCATACCGGGGAAAAACCTTACATTTGCGAACAATGTGGAAGATGCTTTGCCAGTTCTTCCGAATTAAAATTGCATGATCGTAAGCATtcgggaattaaaaaaaatatttgtaacgtTTGTGGGAAGGATTTTGCAACACCCAGTAATTTATTGGTTCATTCAAGAACGCACAGTGGTGAGAAGCCATTTTCTTGTACCGAGTGCGGACGTGCATTTGCCGACAAAGGTTCCATGAAAAAACATTTACGGATTCATACTTATAAGTATAGTGATGTTGATAAAAGTGATGAACAACAAAATTGCACCCAACAACAAGCTTTTACTACAATGCAtaatttaaatggaaatttgGATACGCTTCATACAGTTATTGAACGTACTGTGGATATAGGTTTAAGTGatcgattatattttaatcTTGCTTAA
Protein Sequence: MNSMFYNFNSICRTCLSVNQELKPMFESGGATMLNECQFVEVALEDGFPPHLCTKCHDVLLQSYNFKKLCKESEITLKRLMSEDLNVMKEKGGEDSVSETFDDCNEQYESETRLRIAAEQACTHCSKKFRSLQALRKHMRIHVRKKKFNCLECGKTFTNLDALKTHKCNINQESDKEDLRFNLKSDVSDDLTAFLDAASPPPLPFPCSQCTQSFNAQCDLDLHLSTHSKNGEFICSRCKKQFATRQVLKRHVKTHMLHKPHVCRECGKGFAESHALTKHLRKHTGQPREKKHLCTVCGQGYSEPFYLNLHMRKHTGERPLMCSACGKSFADPRSLKAHNMTHTGERPYKCNICGKAFSQSVNLTKHIRVHTGEKPYVCSECGKCFTQSSSLDKHSRTHTGERPYPCEHCPKRFAERGTLIHHTRTHTGEKPYICEQCGRCFASSSELKLHDRKHSGIKKNICNVCGKDFATPSNLLVHSRTHSGEKPFSCTECGRAFADKGSMKKHLRIHTYKYSDVDKSDEQQNCTQQQAFTTMHNLNGNLDTLHTVIERTVDIGLSDRLYFNLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00789535;
90% Identity: -
80% Identity: -