Ccup041346.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284493.1:19652051-19655118[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00029 0.032 16.3 3.3 1 23 97 119 97 119 0.99 2 23 8.5e-05 0.0094 18.0 0.6 1 23 125 147 125 147 0.98 3 23 0.0053 0.59 12.3 1.6 1 23 153 175 153 175 0.98 4 23 0.0013 0.14 14.3 2.4 1 23 181 203 181 203 0.98 5 23 0.00017 0.019 17.0 0.6 1 23 209 231 209 231 0.97 6 23 0.0062 0.69 12.1 0.5 1 23 237 259 237 259 0.98 7 23 0.0034 0.38 12.9 1.5 1 23 265 287 265 287 0.98 8 23 0.012 1.3 11.2 1.2 1 23 293 315 293 315 0.98 9 23 6e-05 0.0067 18.4 0.4 1 23 322 344 322 344 0.98 10 23 0.00037 0.041 16.0 1.1 1 23 350 372 350 372 0.99 11 23 0.0018 0.2 13.8 1.7 1 23 378 400 378 400 0.98 12 23 0.011 1.2 11.4 2.7 1 23 406 428 406 428 0.98 13 23 0.0014 0.15 14.2 0.5 1 23 434 456 434 456 0.98 14 23 0.00064 0.071 15.2 2.3 1 23 462 484 462 484 0.98 15 23 0.001 0.11 14.6 0.9 1 23 490 512 490 512 0.98 16 23 0.0045 0.5 12.6 4.2 1 23 518 540 518 540 0.98 17 23 0.00026 0.029 16.5 2.6 1 23 546 570 546 570 0.98 18 23 0.014 1.6 11.0 7.1 1 23 662 684 662 684 0.99 19 23 0.0092 1 11.6 6.9 1 23 690 712 690 712 0.98 20 23 0.0036 0.4 12.9 6.8 1 23 718 740 718 740 0.96 21 23 0.00027 0.03 16.4 0.3 3 23 777 797 775 797 0.98 22 23 0.0031 0.35 13.0 0.2 1 23 803 825 803 825 0.98 23 23 7.8e-05 0.0087 18.1 1.4 1 23 830 852 830 852 0.98
Sequence Information
- Coding Sequence
- ATGAACAGTTATAAGACTATCGGTGAGCAGACCAACAAGAGTTGCAATATAAAGCAAGAATTCCCCGAAGACGAATTGTTATTACACCTACAATGTCTTGCTGTAACTAAAAtaAACGAAGAAACGACAGTCCAAACTGACAACTTAGATTCGAAGTGTAATGcttcttgttttaaatttgaacctTTCTTAAACGCAGAACTTGATTCAAAAAATGCTGTTGAAACCTACATCAGCAATGAGTCTTGCGAAGATAAAACGCAGACTGAAAGTGCAAGGAAGAAACTATATAAATGTGAAGTGTGTACTCACGTTACTTTCCAGAAATCCAATTTTGCAAAACACATGAAAATTCATAGTggcaaaaaaccttttaaatgtaaattatgtgCTCTCGGATACACCAAAAAATCTAATTTGGTACGGCACATGGAAATTCACACGGGGGAAAAACGTTTTGAGTGTAAACAATGTGAGTTTAAAACGGCTCAGAAATACAGATTGGTGCAACACATGAAAATTCACAGTGGGATAAAACCGTTTGAATGTACACTATGTGACTTCAAAGCCATTCACAAGTTCAATTTAGCACAACACATGAAAACCCACAGTGGAATTAAACCATTTGATTGTAAATTATGCGGTCTCCGAACTACTCAAAAATCTAGTTTAGTGCTACACATGCAACTTCACACTGGGGAAAAACCATTTGAGTGTAAAGAATGCGAGTTTAAAACGGCTCAGAAACCCAGACTGGTACAACACATGAAAATTCACAGTGGGATAAAACCTTTTGAGTGTAAAGAATGTAAGTTTAAAACTGCTCAGAAATCTAGATTGGTACAACACTTGAAAATTCACAGTGGGGAAAAACCTTTTGAATGTAACGAATGTGAGTTCAAAACTACTTTGAAAACCAGGTTGATACAAcacatgaaaattcatactggttTAATAAAACCTTTCGAATGTAATTTATGTGGCCTTCGAACCACCCAAAAATCTAGTTTAGTACTGCACATGCAACTTCATACTGGGGAAAAGCCTTTCAAGTGTAACGAATGCGAGTACAAAACGGCCCAGAGGCGCATGTTGGTACAACACATGAAAATTCATAGTGGAATGAAACCTTTTGAATGTacattatgtaattttaaaaccatatacaaattcAATTTAGTACAACACATGAAAATTCATAGTGGGGAAAAACCTTTCGAATGTTACTTATGTGGTCTCAGAACCACCAAAAAATGTAGTTTGGTACAGCACATGCAACTTCACACTGGGGAAAAGCCCTTTGAATGTAAAGAATGTGAGTACAAAACGGCTCAGAAACCCAGATTGATACAACACATGAAAATTCACAGTAGTATAAAACCTTATGAATGTACATTATGTAATCTTAAAACTAACCATAGATCTAGTTTGATACAGCACATGCAACTGCACagtggagaaaaaccttttgaatGTAAACAATGTGAGTACAAAACGGCTAAGAGATACAGTTTGGTAGTACACATGAAAATTCACACTGGGGAAAAACCTTATAAGTGTAAAATATGTGGTTTTAATACTGCTTATAAAAATCATCTACTAGATCACATGCACCTTCACACTGGGAAAAAAGCTTTTGAATGTAAAGTGTCTGGATGTGGATACAGTAGTAGTCATAAAACTCAAGTAACAaagcatatgaaaactcataatAGGGAAAAGGAAAATGGTGAAAATAGAGTTAGTTTTACCTGCACTACAAAACAAGAATTCTCCGAAGACGGAGTGACTGTTATCAAAGGTTTTGCAGAAAAACAACAGCAAGCTACCGCAATCGAACACCCTAATGTAAAAATTGAACGCAACATTCCAGATATGAAACACAATGAAATTGTTATCGAAGCACTATCTTCACTGGATGGCAAATTTaccatacaaaataatattcgggataaaacaatttcaaaatctaTAAAGGCGCGTTTTCAATGTTCAGAATGCAATTATAAAACCGCCCATAAATGCAACTTCATTCTACATAGAAGAAcccacactggagaaaaaccgtATAATTGCGAAAAATGTCAGTACAAAAGTTCTAACCGATGCAACTTTACAAGACACATGAAGAATCATACCGGGGAGAAACCCTTTGAATGCAAAACTTGTGGTCACAAAACTTTCCGCAAATGCGATTTAATgagacatatgaaaattcacagTACGAAGAAACTGTCCGAGTGTAATATTTCTGGCCTCAAAACTGCTCACAAATCCTCTGCCATAAAAAAGCACAATATAATTCATACTGGGGAAAAAACGTTTGGATGCGAAGTCTGTGGCTTCAAAACAGTACGAAAAGGTAGTTTAGTACGGCATATGAAAATTCACACTAGAGAAAAGTctttcaaatgtaaaatatgtgATTTTGAAACTGCTTATAAACCATATCTAGCCCAACACATAATAATTCACAATGAGAAACCGTTTGAGTGTAAAGATTGTGGTTTTAAAACTACTCACAATTCTTACTTAGTTGAACATATGGAAATTCACACTGGAAAGAAACCATTGGGATGCAAAGTGTTTGGTTGTGGATACAGAAGTAGTCAGATATCTGATGTAATGAACCGTATGGTAAGTCATGAAAAGGAGAAGGAAGATGATGAAAATACAGATAATTTTGTACGTAATAGCATAAAACAAGAATACTTGGAAGacgatttattttcttttattgatATCAAAGAAGAACCAAACCAAATCACCACAATCGGACCCAACATAAAAATCGAGTGCAACATTccagaaataaaatacaatgaaTTTTTTACCAAGACAGAATCTTCAAGACTGCACGAAGAATTTATCATAAAAGATGATGTTTTggattaa
- Protein Sequence
- MNSYKTIGEQTNKSCNIKQEFPEDELLLHLQCLAVTKINEETTVQTDNLDSKCNASCFKFEPFLNAELDSKNAVETYISNESCEDKTQTESARKKLYKCEVCTHVTFQKSNFAKHMKIHSGKKPFKCKLCALGYTKKSNLVRHMEIHTGEKRFECKQCEFKTAQKYRLVQHMKIHSGIKPFECTLCDFKAIHKFNLAQHMKTHSGIKPFDCKLCGLRTTQKSSLVLHMQLHTGEKPFECKECEFKTAQKPRLVQHMKIHSGIKPFECKECKFKTAQKSRLVQHLKIHSGEKPFECNECEFKTTLKTRLIQHMKIHTGLIKPFECNLCGLRTTQKSSLVLHMQLHTGEKPFKCNECEYKTAQRRMLVQHMKIHSGMKPFECTLCNFKTIYKFNLVQHMKIHSGEKPFECYLCGLRTTKKCSLVQHMQLHTGEKPFECKECEYKTAQKPRLIQHMKIHSSIKPYECTLCNLKTNHRSSLIQHMQLHSGEKPFECKQCEYKTAKRYSLVVHMKIHTGEKPYKCKICGFNTAYKNHLLDHMHLHTGKKAFECKVSGCGYSSSHKTQVTKHMKTHNREKENGENRVSFTCTTKQEFSEDGVTVIKGFAEKQQQATAIEHPNVKIERNIPDMKHNEIVIEALSSLDGKFTIQNNIRDKTISKSIKARFQCSECNYKTAHKCNFILHRRTHTGEKPYNCEKCQYKSSNRCNFTRHMKNHTGEKPFECKTCGHKTFRKCDLMRHMKIHSTKKLSECNISGLKTAHKSSAIKKHNIIHTGEKTFGCEVCGFKTVRKGSLVRHMKIHTREKSFKCKICDFETAYKPYLAQHIIIHNEKPFECKDCGFKTTHNSYLVEHMEIHTGKKPLGCKVFGCGYRSSQISDVMNRMVSHEKEKEDDENTDNFVRNSIKQEYLEDDLFSFIDIKEEPNQITTIGPNIKIECNIPEIKYNEFFTKTESSRLHEEFIIKDDVLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -