Ccup050974.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284495.1:38679834-38685000[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.03 3.4 10.0 0.1 1 23 30 52 30 52 0.97 2 24 0.00023 0.025 16.6 2.0 1 23 58 80 58 80 0.97 3 24 4.6e-06 0.00051 22.0 4.3 1 23 86 108 86 108 0.98 4 24 0.00099 0.11 14.6 0.5 2 23 116 138 116 138 0.91 5 24 0.00068 0.076 15.1 0.2 1 23 142 164 142 164 0.98 6 24 3.8e-05 0.0043 19.1 3.9 1 23 174 197 174 197 0.97 7 24 0.0055 0.62 12.3 0.2 1 23 203 225 203 225 0.96 8 24 2.2e-07 2.5e-05 26.1 1.2 2 23 232 253 231 253 0.97 9 24 5e-07 5.6e-05 25.0 1.1 1 23 259 281 259 281 0.99 10 24 0.92 1e+02 5.3 0.0 1 22 427 448 427 448 0.91 11 24 0.0028 0.31 13.2 1.2 3 23 460 480 458 480 0.97 12 24 0.00028 0.031 16.4 0.9 1 23 486 509 486 509 0.96 13 24 8.5e-06 0.00095 21.1 2.4 1 23 520 542 520 542 0.97 14 24 8.3e-05 0.0092 18.0 3.7 1 23 548 570 548 570 0.97 15 24 9.8e-06 0.0011 20.9 1.2 1 23 576 598 576 598 0.99 16 24 0.29 33 6.9 1.4 2 23 782 803 781 803 0.84 17 24 0.022 2.4 10.4 1.9 1 23 809 831 809 831 0.97 18 24 0.0057 0.64 12.2 1.8 1 23 837 859 837 859 0.96 19 24 0.00049 0.055 15.6 1.1 1 23 865 888 865 888 0.97 20 24 0.00073 0.081 15.0 2.0 1 23 900 922 900 923 0.95 21 24 0.0034 0.38 12.9 1.6 3 23 933 953 932 953 0.98 22 24 8.1e-06 0.0009 21.2 2.2 1 23 959 981 959 981 0.97 23 24 5.9e-06 0.00066 21.6 4.2 1 23 987 1009 987 1009 0.98 24 24 0.091 10 8.4 0.1 1 22 1015 1036 1015 1036 0.93
Sequence Information
- Coding Sequence
- ATGAGCTCCCAAAATATTTCTCGTAGAACTAAAGATGAGAGattcaacaccaaGCGCCCTCCTAGACATCGAAGTAAAGATCCTAAATATGCATGTCCACAGTGTTCAAAATTATTCGCTTGGGAAAGTCGTCTACAGAACCACATGGTCACACATGACCAGTCGAAACCATACACCTGTAAAGTGTGTTCAAAATCTTTCAAGAGAGTTCAAGAACTACGATTGCACAGTTTACGACATAACCGTAAAGCTTTGCACAAGTGTGATATCTGCGATAAGACCTTCAAGGACAGTAAATCGTTCAACACACACATCAAATCGCATTGTGAAGGTTACTATACGGCTTATTGCAAAGAATGCAACAAGGGTTTTCCTAATGAACGCAAATTGCAACAGCATATTGATGCCAAACATAAAAAGTTGTATACATGCGAAATTTGTAATAGGTCCGTTGGCAGCGCTCAGAGCTTGAAGATACATAAAAAGGTTCACGATGAAGGCCACAGAAGGAACAAGGGACACAAGTGCAGTTTGTGTGAAAAAGCTTTCGTGCATCGAAGTAGTTTAAATTTGCACATACGATCGTACCATGTTGGTGAATCTAATTTTGTATGCgacgtttgtggtaaaaagtTATCGTCGGTAATTAGTTTGAGGGACCATAAGTTGCTGCACGATGGCTTAAAGCCTATCAAGTGTACGGAATGCGGTAAATGTTTTGCCAAACAATCGACGTTAGCAGTTCACATGCGGGTACATACAGGTGCAAGGCCATATAAGTGTGATGAGTGTGGAAAAACGTTTACTCAACGTAGCACTATCGTTATTCACATGCGATATCATACAGGGGAACGACCGTATAAGTTGGCCGTTGTTGTGTTTCCAGCGGGAATAAAGGTAAAACGTGTAGTCAAGGAGGACACAGAAAATAAGAAGTTATGCTCCAAAAAGTTCTCACTAAAGAGTCCTGTAACAAAAGATCGAATGAAGAAACATTTAAGTGAAAACGATAGAACTAAGGaacttattcaaaatatttcaaaacctgGAGTTCGTATTGTGAGGATAAAGCATTcggaaaaaaaatcgtttgatagTGATGATGACGGTAGCATGGAAGTGGAATTATATAAAGATGACGACTCGGATGAAGATTATGTTCCGAAACAGAAGCACAAGAAGAAAACGTCCAAGCAAGAAGTAGAAACAAAAGGCGTGGATGACAAGAAGAAATCGTCAAACCGACAAGGAAATGTTATGACTGTTAGAAGAACCTCTTATGTTTGCATCATGTGCGGAGAAAGCTTTCcatcatttgaaatattatcgGATCATATGAGAAGTACGATTTCTTGCCGACAAGAACAAGTGGTGATATGTCCCATTTGCgagaaaggttttaaaaataggTCTCGATGTAATGCACATCTAAACACACACAAAGAAAAACCTAAACACCCATGTACCAAGTGCGGAAAAGAATATCCCAACAAGATTGCTCTGCATGCTCACTTAGAAACCATGCACACCCTCTATTTTGATGCAACCTTAGACGCATTTGCGTGCAAAATCTGCTCTAAGTCGTTCAAACTTTCGAGTTCGCTTAGAGCGCACATACACACGCATAATCAAGAACGCAGATTTGTATGTGACGAGTGTgggaaaacttttaaaaagaatactAGCCTTAGCGAACATAAAAAGCACCATGCTGGTGAGTTCCCATATCAGTGCGATATTTGTGAGAAGAAATTTGTATCCAAATCTGCTCAGAATACTCATATGAAAAGTCACACTTACGCATATATTGATGCATTGGTGAATTATAATCCATTGAAGTTAACCGATCCCTTCAGCGTAAACGAAAAAGAATATAATTTGAAGATGAACATTAAGAATCGTTTCCAAGAAGTTATATGCAAACCCAGAATTGCTGTGAAATCCTTTGCTAATGTAAGCTGTTTAGAGAAGCaagaacagaaaattttaaaaaccccaGAAGAAATGTTGCAGAATTTAGTATTTGTTATCGATGCAGTGGCAAGAGGTAACAACGTAAAAAAGGATGCGACTGATAACTTGCAAGAATCTGAATCAGTAAGCGATATAAATGATCCTGAAGGGAAAGTTAGCCGTAAAAAGAGGGAAATTAGAAACAGACCAAGGGTACGCAGAAAACTAATTTACTATTGCCATGTTTGTAATAATCAACAGGAGTTGAcgagaaaaaaattacttaagcaCTTTATATCTCATGGAATGCCAGACACGTTTTGTTCTTTGCATGAAAACTATAGACAAGCACGATTGAAATATCCCCCAAAAGAGACGAACGAAAGTATTTATTGCGAAATATGTaacgaaacatttaaaaacagcgTAATCTTCTGTTTACATTCAATCAAACATAATGATAACAAGAAATATTCTTGCCATGTATGTACATATAGCACcgcaacgaaaaattacattgaaaAGCATGTCAAGGCTCATGAAGGAAAGACTCTTCACATGTGTGAGATATGTAAAAAGGGTTTTACTAGCAGTGTTCACGCTGCTGAACATAAAAATgttcatacaggagagaaaccatTTGTGTGTGATTTATGCAGTAAAGCTTTTAGCACTTCGAGTATTTTGTCGCAGCATCGTCGTAAGCAACATTGGGAATCTTTGGGTTTTTTAACTCCGGCTAAGTACGATTGCACAATCTGTGATAAAAAGTACACAGTACGCAAAGGTCTTGACCTTCATATAAAGCGTCACCATATGCAAGGTTTTGACGAATCGAAACTTTGTGACATATGTGGAAGACGTTTGTCCAGCAAAGAAAACCTCAAGTTTCACAAAAGAACTCATACCGGATACAAACCACATGTTTGTAACGtttgcaaaaaaagtttttcgaaGAAAGAGTTACTTAAGGAACATGTACGAGTACATTCGGGAGAAAGACCGTTCAAATGCAAACATTGTAGCAAGGGCTTTACCCAACGCTCTTCTCTTAAGATCCACGAAAGAATTCATACAGGCGAAAGACCTTATATTTGCCGTTTGTGCAACAAAGGATTTATTTCGAAAGGTGTTATGGATATACACATGAAAAGATGCGAAGGAGTTtcagaagattcagattaa
- Protein Sequence
- MSSQNISRRTKDERFNTKRPPRHRSKDPKYACPQCSKLFAWESRLQNHMVTHDQSKPYTCKVCSKSFKRVQELRLHSLRHNRKALHKCDICDKTFKDSKSFNTHIKSHCEGYYTAYCKECNKGFPNERKLQQHIDAKHKKLYTCEICNRSVGSAQSLKIHKKVHDEGHRRNKGHKCSLCEKAFVHRSSLNLHIRSYHVGESNFVCDVCGKKLSSVISLRDHKLLHDGLKPIKCTECGKCFAKQSTLAVHMRVHTGARPYKCDECGKTFTQRSTIVIHMRYHTGERPYKLAVVVFPAGIKVKRVVKEDTENKKLCSKKFSLKSPVTKDRMKKHLSENDRTKELIQNISKPGVRIVRIKHSEKKSFDSDDDGSMEVELYKDDDSDEDYVPKQKHKKKTSKQEVETKGVDDKKKSSNRQGNVMTVRRTSYVCIMCGESFPSFEILSDHMRSTISCRQEQVVICPICEKGFKNRSRCNAHLNTHKEKPKHPCTKCGKEYPNKIALHAHLETMHTLYFDATLDAFACKICSKSFKLSSSLRAHIHTHNQERRFVCDECGKTFKKNTSLSEHKKHHAGEFPYQCDICEKKFVSKSAQNTHMKSHTYAYIDALVNYNPLKLTDPFSVNEKEYNLKMNIKNRFQEVICKPRIAVKSFANVSCLEKQEQKILKTPEEMLQNLVFVIDAVARGNNVKKDATDNLQESESVSDINDPEGKVSRKKREIRNRPRVRRKLIYYCHVCNNQQELTRKKLLKHFISHGMPDTFCSLHENYRQARLKYPPKETNESIYCEICNETFKNSVIFCLHSIKHNDNKKYSCHVCTYSTATKNYIEKHVKAHEGKTLHMCEICKKGFTSSVHAAEHKNVHTGEKPFVCDLCSKAFSTSSILSQHRRKQHWESLGFLTPAKYDCTICDKKYTVRKGLDLHIKRHHMQGFDESKLCDICGRRLSSKENLKFHKRTHTGYKPHVCNVCKKSFSKKELLKEHVRVHSGERPFKCKHCSKGFTQRSSLKIHERIHTGERPYICRLCNKGFISKGVMDIHMKRCEGVSEDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -