Ccup050976.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ctenicera cuprea
Gene Symbol
RPH1
Assembly
GCA_958336395.1
Location
OY284495.1:38688148-38698557[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 34 0.001 0.11 14.6 4.1 2 23 62 83 62 83 0.97
2 34 0.00029 0.032 16.3 2.1 1 23 89 111 89 111 0.98
3 34 9.1e-05 0.01 17.9 1.0 2 23 160 181 159 181 0.97
4 34 0.052 5.8 9.2 4.4 1 23 187 210 187 210 0.96
5 34 6.1e-05 0.0068 18.4 1.9 1 23 218 240 218 240 0.98
6 34 5.6 6.2e+02 2.8 2.5 2 23 246 268 245 268 0.93
7 34 0.00028 0.031 16.3 3.4 1 23 310 332 310 332 0.97
8 34 0.00054 0.06 15.5 0.1 1 23 340 362 340 362 0.98
9 34 0.0022 0.25 13.5 0.1 1 23 368 390 368 390 0.97
10 34 0.0021 0.23 13.6 1.1 1 20 423 442 423 444 0.94
11 34 0.021 2.3 10.5 4.8 1 23 544 567 544 567 0.95
12 34 0.00089 0.099 14.8 0.4 1 23 573 595 573 595 0.97
13 34 0.009 1 11.6 2.5 1 20 640 659 640 662 0.94
14 34 6e-05 0.0067 18.5 1.1 1 23 687 709 687 709 0.97
15 34 0.0019 0.21 13.8 1.1 1 23 715 738 715 738 0.95
16 34 6.9e-05 0.0077 18.3 0.4 1 23 742 764 742 764 0.98
17 34 0.0048 0.54 12.5 0.2 3 23 770 791 769 791 0.90
18 34 0.00093 0.1 14.7 1.0 2 23 795 817 795 817 0.96
19 34 0.0025 0.27 13.4 3.1 1 23 827 849 827 849 0.94
20 34 0.0031 0.34 13.1 0.4 1 23 857 879 857 879 0.98
21 34 1e-05 0.0011 20.9 1.0 1 23 885 907 885 907 0.99
22 34 1.9e-05 0.0021 20.1 1.7 1 23 913 935 913 935 0.98
23 34 0.11 13 8.1 2.0 1 21 941 961 941 962 0.94
24 34 0.029 3.2 10.0 1.7 1 23 1085 1108 1085 1108 0.95
25 34 0.00058 0.065 15.4 3.8 2 23 1115 1136 1114 1136 0.97
26 34 0.00011 0.012 17.6 1.4 1 23 1142 1164 1142 1164 0.98
27 34 0.0085 0.95 11.7 3.5 1 23 1170 1192 1170 1192 0.98
28 34 0.0027 0.3 13.3 0.2 1 23 1198 1221 1198 1221 0.94
29 34 0.00015 0.017 17.2 0.7 1 23 1225 1247 1225 1247 0.98
30 34 7.6e-05 0.0085 18.1 1.5 1 23 1256 1278 1256 1278 0.98
31 34 0.00099 0.11 14.6 0.5 1 23 1287 1309 1287 1309 0.95
32 34 0.00019 0.022 16.8 1.8 1 23 1315 1337 1315 1337 0.97
33 34 6.8e-05 0.0076 18.3 4.3 1 23 1343 1365 1343 1365 0.97
34 34 0.0036 0.4 12.9 2.4 1 23 1371 1394 1371 1394 0.96

Sequence Information

Coding Sequence
atgcCAGATTCCAATGCTGGCTTACCAAACCCAAATCTTAGCACCGCCATAGAAGATGCAACGACCGTATCAGAGTTAAACGACGTTTCTTGCACTAATGCGAATTCGTCCGTGGCATCAAAACTGGTAATTGCTGCTGTGATACCAAAAGTGAGCATTAGTAGGAAAACGGGCCAACCTAACGTTTGTActatttgtaacaaaaaatttcgCAGTAAATGCTCACTTGATATTCACTTAAAAAGGCATAGTGATGAAAAACCTTACAGTTGTCAGTTGTGTTCGAGAACTTTTAAACGTTCTGATCATGCTACGCTGCACATGATTGTGCATCTAAATGAGCAAAAAGCAAGTGGTACCACTACAAAATCAAAGAATGGTGTCGAGTTACCAGAATCGAGTTTGATCCTGATGCCAAAACCAAATTctagttttgatttaaattctgatgatacacaaattttaatcaGGGTTCAAACCTGTacaatatgtaataaaagttttccaaataaaaataagcttGCCATGCATAGAGCTACGCACAGCAAAGAAAAGCCTTTCAGCTGCGAAGTGTGTTGTATGAAATTTAAACATTCATATCTACTTCAAGTGCATATGAATGAATCGCACACGGACTTAACCGAGTGTCCATTCAAATGCGAAAAATGCGAAAAGTCATTCCAATCAAAGAAACTTCTAAGTATTCATCAAAATATACATATCGGTATAATTGTTACTTGTCCATTTTGCGAAGAGCAACATCCAACCCACAGAAGTCTTAAAAGACACACAAAGGCTGTTCATGGAATAACTCGTGTTGCCGAAGATGAAACATATCAACGTAAGGTTCGTTCCAAAACTTTGAGGGATCATCACAGTTACTTCAAGCATGAAAATGCCGACGCCGGAACTGAACCGGAAAAGAGACACTCGTGCTCCGTATGTAATCGTAATTTTAAACGTAGCACGCTATTAAGACAGCATTTGGTAACGCACGATGTTACCAGTAATAGAAAATATGTGTGCGATATATGtggtaaaattttgtcataTCAGACCGGACTTATTGAGCACAAGAAAATTCATGCAGGAGTCAAACCCTTTGTATGTGACAAGTGTGGAATGGCATTTGTAAGTAAAAGATATTTAGACGGTCATTATATCGTACATACGAAAGAGAAACGTTATGTGTGTGAAGTGTGCGACGCAGCACTACACGAAATCCACATTAGTTATCCTCATCAGGCATCACACAGGCGAAAACCCTACAAATGCAATTTATGTGAAAAAGCATTTGCCAGCCGATGTTTATTGAACACGCATAAGTTAATAAAGGAAAAGGAAATATTTCTGCTCATTACTGCGTCGAATTCAGATGGTTCCAAGAATCCAAATATTATTCAAGTACCACGAGAATGTCTTATTGGCATATGGCCTTCGAAAGATGTTGCATTATCGCCGTTTGCATCCAATCAACGTTCACCGAGATTGAGTTCCACAAGTTCATTGGAATCGTTTGTTGCTATCGCACCCGAGCGAAAATGGATTGTATCAAACAATgatgttattttaacaaaaccaaTTGGTTCTACAAAAGTTGTTTCAACGCCAAAAGTACCACGTAAAACACATTGTTGCAAGGTGTGTCAAAAACTCTTTCCCAGTAGCACGAAACTTCGCTATCATATGTTAAGTGTACACAGTGACGAAAGACCTTATAGTTGTCCAATATGTTCGAAATCATTTAAGCTACCTTTCCGAGTGAAAAATCACATGGTTGTACATTTAAACCAAAAAGGAGAGCGAAATGGAGATTTACCAAATCTTCCTATCCTATCGCAACCTACAACAATTTCGTTACCAGAAACGAAAATATCAGCTATAGCACcaacattaaacaaagttgTTAATGGATGGCATTATTGTTCATTGTGTGGCAAAGGTTTTCCAGGTAGAAGTAAACTAGTTAGACACTTAGAATGTCATAACGATGAAAAACTATTAGGTATATCATCTAATAAATATGAGAATCGGAAGGAAACACAATTAATCACGGTACACCCTTGCACAATATGCAagaaaatgtttccaactaaaTCTAAACTAGATCTTCATATAGCAACCCATAGCGATAAGAAACCTTTCGCCTGTAATATGTGTTCAAAATCCTTTAAAATACTTCAGCAATTAAAAACGCACGTCAAACTGATGCATACTGACGAATTCAAATGCGAAGAGTGTCAAATaccatttaaatctaaaaaacttCTAGTTGCACATCAAAATTTGCACGAGGTTCCTGTTGCCTGCGATATTTGTGGAAAACTGGTTAGCAGCAAGAAAAATCTACAAACTCATAAAATCGATGCACATGAAAAACGTTCTTGTAATGACTGTTCCATGGACTTTAGCAATAACCGCGAGTACAAAAAACACATTCTTAAAATTCATAAAGCGTCGAAAGGAGTTGTAAAAAAGCATGTGTGTACTGTATGTGGTCTAAGTTTCAAATTTAACTGTCAGCTTAACTATCACATGGTGGCTCACGATAAATCAAGCAAAAACAAATACGTGTGTGATGTCTGCGGACTAGTCTTGTCTACCCGAAACTCTTTTCTCCAACACAAAATGCGCCATGCAGGAGTAAAGCCTTTTCAATGTGACGTTTGTGGAAAAACGTTTATAACTAATCAAAAAATGAAAGACCACGCTCGTACTCATACTGGAGAGCGTCCATATACTTGTGATGTGTGTAAGAAAACGTTTACTCAAAGGACCACGTTAGTTATCCACACGAGACTCCATACCGGCGAAAGACCCTATACTTGTGGTGTTTGCCAGAAGGGATTTGTAAGCCGTTGTTTGATGAATAGCCATAAGAAattcaaGACTATTCAAAAATCGTTACGGCTTCTTACGTTACCATCACAAGCGGCCATTGTAACACCAAACAAGAATTATATTCCTATGCCAGACTTGAATATGTCTGCAAAACCAAATAAGGCGGGGAACTTCGTTGCAATACCCCAACCAAATGTTATTACTCCACCAATTAAGGTTGTTGTCACTAAGCCAATATCTGTCCTCGAAGGATCTAAAGTTAATGCTAGTGAATTTAAGCTCAGAAGCAGCACCGATACACAATCAAATGTAATTGCTGAAGCACACTCAAACACGGATATTAAAACAGAAGTGTATGTTAGTGATGAAGGGGAACAACAACCGAACCCACCAGACATTTTAAAGCCGCAATTTTTTTGCGAGTTTTGCAACAGGGGTTATACATTCAGAGAAACGTACATGGCTCATATGACGATTTTCCATCCCAAGAAAGAAGAACTTACTTGCGGTTTTTGCCAAAAAGTTTTCGATCGGAGACATCTTTATACTAAACACTTACGCTCCCATAAAGTAGCGAAACCCTACACATGCGAAATATGTTCGAAACCTTTCTCACAACTTTGCACTGTTAAGCGCCATATGGCCATACATTCAAATGATAGAGCCTATAAGTGTGAGTTCTGCGAAAAGATATACAAATCACAGACTAGTTATAAAATGCACAAAATGCAGCATATAAGAGGTCTTATTTACACTTGTAAGCTTTGCGATAAAGCATATGCTTACCAACCCCTTCTCGATAAGCACGTAAATGactctcatacaaaaatatttgaatgcgACATATGCAAAGAGGTATTTAAAAGCGGTTACGCGTATCAGAGACACAAGCGTGTCCATCAAGGCAGATTTCCAgttaaaaactttgtttgtcCGATATGTGAAAGAGGTTTTGAGGATAATTGTCATCTAAAGCAGCATCTGTTGATCCACAATCCAGaagcaaaaactaaaatgtttatatGTGATGTATGCGGAAAAGTTCTAACTAAACAGACTTCTTTACGCGACCACAAATTTATTCACgagaacattaaaccttttcagtgcgccACCTGTGGAAAAATGTTCAGGACGAAGCATAGTATGGTGGCTCATTCTCAAATACACACTGGCAAAAGAAACCATTCTTGTAAAATATGCGAAAAGAAATTTACTCAAAGGTCACCATTAATCATCCATATGAGACATCACACAGGCGAAAAACCTTATGAATGCGGTTTATGTGAAAAGGCGTTTGTTAGCCGATGTTTATTGAACAAtcataagaaaaacaaacacaagAATTTAAATTCTACTACTCCGTCGGAATCGTTTGTCGCTACTACACCAGAACGTAAAGCGATTTTGTCAAACGATGatgttgttttaacaaaatcaaCTGCATCTACGGATTCAAATACAAGAACTATTTTTACACCAAGAAAATCACGTAAAACACACAAGTGCATGGTGTTTCAGAAAGATTTTCCTAGTACCACCAAACTTCGCTATCATTTGTTGACGGTACACAGTAACGAAAGACCTCATAGTTGTTCAGTGTGCTTAAAAAGTCATTTAAAAACTACCTTTTCATGTGAAAAATCACATGGTTGTACATATAAACGAAAAAGGAGAGTAAAATGA
Protein Sequence
MPDSNAGLPNPNLSTAIEDATTVSELNDVSCTNANSSVASKLVIAAVIPKVSISRKTGQPNVCTICNKKFRSKCSLDIHLKRHSDEKPYSCQLCSRTFKRSDHATLHMIVHLNEQKASGTTTKSKNGVELPESSLILMPKPNSSFDLNSDDTQILIRVQTCTICNKSFPNKNKLAMHRATHSKEKPFSCEVCCMKFKHSYLLQVHMNESHTDLTECPFKCEKCEKSFQSKKLLSIHQNIHIGIIVTCPFCEEQHPTHRSLKRHTKAVHGITRVAEDETYQRKVRSKTLRDHHSYFKHENADAGTEPEKRHSCSVCNRNFKRSTLLRQHLVTHDVTSNRKYVCDICGKILSYQTGLIEHKKIHAGVKPFVCDKCGMAFVSKRYLDGHYIVHTKEKRYVCEVCDAALHEIHISYPHQASHRRKPYKCNLCEKAFASRCLLNTHKLIKEKEIFLLITASNSDGSKNPNIIQVPRECLIGIWPSKDVALSPFASNQRSPRLSSTSSLESFVAIAPERKWIVSNNDVILTKPIGSTKVVSTPKVPRKTHCCKVCQKLFPSSTKLRYHMLSVHSDERPYSCPICSKSFKLPFRVKNHMVVHLNQKGERNGDLPNLPILSQPTTISLPETKISAIAPTLNKVVNGWHYCSLCGKGFPGRSKLVRHLECHNDEKLLGISSNKYENRKETQLITVHPCTICKKMFPTKSKLDLHIATHSDKKPFACNMCSKSFKILQQLKTHVKLMHTDEFKCEECQIPFKSKKLLVAHQNLHEVPVACDICGKLVSSKKNLQTHKIDAHEKRSCNDCSMDFSNNREYKKHILKIHKASKGVVKKHVCTVCGLSFKFNCQLNYHMVAHDKSSKNKYVCDVCGLVLSTRNSFLQHKMRHAGVKPFQCDVCGKTFITNQKMKDHARTHTGERPYTCDVCKKTFTQRTTLVIHTRLHTGERPYTCGVCQKGFVSRCLMNSHKKFKTIQKSLRLLTLPSQAAIVTPNKNYIPMPDLNMSAKPNKAGNFVAIPQPNVITPPIKVVVTKPISVLEGSKVNASEFKLRSSTDTQSNVIAEAHSNTDIKTEVYVSDEGEQQPNPPDILKPQFFCEFCNRGYTFRETYMAHMTIFHPKKEELTCGFCQKVFDRRHLYTKHLRSHKVAKPYTCEICSKPFSQLCTVKRHMAIHSNDRAYKCEFCEKIYKSQTSYKMHKMQHIRGLIYTCKLCDKAYAYQPLLDKHVNDSHTKIFECDICKEVFKSGYAYQRHKRVHQGRFPVKNFVCPICERGFEDNCHLKQHLLIHNPEAKTKMFICDVCGKVLTKQTSLRDHKFIHENIKPFQCATCGKMFRTKHSMVAHSQIHTGKRNHSCKICEKKFTQRSPLIIHMRHHTGEKPYECGLCEKAFVSRCLLNNHKKNKHKNLNSTTPSESFVATTPERKAILSNDDVVLTKSTASTDSNTRTIFTPRKSRKTHKCMVFQKDFPSTTKLRYHLLTVHSNERPHSCSVCLKSHLKTTFSCEKSHGCTYKRKRRVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-