Ccup022762.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284489.1:28971621-28971929[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-06 0.0008 20.7 0.0 2 39 16 53 15 57 0.92 2 2 8.7 1.6e+03 0.5 0.0 29 36 86 94 86 100 0.81
Sequence Information
- Coding Sequence
- ATGGtgcgaaattataaaaataaaacaaatagagCAAGCATATGCGAAACAagcattaaaaatgcaattaaagaAGTTCTAGGCAAAAAAGTGTCAGAAAGAGTAGCTGCTAgagattttaatgtaaaacgCGGCACCTTACATTCGAGAATTcagcaaattaaacaaaaatactcaCCAGAGGAACTATTAAGAATGTTTAACGATGATTCCGGCAACAAAAGTAATCCAGATGAGCAAAATAGGGCTATTTTTCCAGCAAATACACTGTATGCCAGGTTTTTACCAACGAACAGGAAGCTAAATTAG
- Protein Sequence
- MVRNYKNKTNRASICETSIKNAIKEVLGKKVSERVAARDFNVKRGTLHSRIQQIKQKYSPEELLRMFNDDSGNKSNPDEQNRAIFPANTLYARFLPTNRKLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -