Ccup042432.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ctenicera cuprea
Gene Symbol
pol
Assembly
GCA_958336395.1
Location
OY284493.1:31863101-31886422[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.5e-07 2.9e-05 25.3 0.1 3 42 1036 1075 1034 1077 0.93

Sequence Information

Coding Sequence
atgcttaaagaaaatattatcgaACCCTCAGAATCGCCCTACAATTTCCCAATTTGGGTGGTTCCAAAAAAAGCCGATGCCtctggaaaacaaaaatttcgtatCGTAATTGACTATAGAAAATTAAACGCTGAAACCATAGAAGACAAACATCCTCTTCCAAATATAGAAACTGTTCTAGACACTTTAGGACGAGCCCAATACTTTTCAACTTTGGATCTTGCCAGCGGATTCCaccaaatagaaattaaaccaGAAGATCGCGAAAAAACTGCCTTTTCCACTGAGGAAggccattttcattttaaaagaatgCCCTTCGGATTGAAAAATGCCCCTGCAGCTTTCCAAAGAATGATCAACACTGCCTTATCAGGATTAGCACCCCTACAGTGCCTCGTTTATCTCGACGATGTCataatattttctacttccCTACACGAACACTTAAACAGATTAAAAAGCGTTTTTGAAAGATGtcgaaaaaccaatttaaaaattcagcttgACAAATCAGAATTTCTACACAAATCAGTCAATTATTTAGGACATGTCATTACACCCGATGGAATAAAGCCTAACCCCGACAAAATTCATAGTATCAAAAATTTCCCTCTTCCCAAAACTCGTACAGAAATCAAATCTTTTCTCGGACTTTTCGGCTACTATAGAAAATTCGTGAAAGACTTTGCCAAACTAACAAAATTCTTAACAGTGTGCTTGAAGAAAGataacaaaatcattcattcgcaaaattttattgattcatTTAATCAcctaaaaacacttttgaccaatGAACCAATCTTAGCCTACCCTGACTTCGACAAGACCTTCGAATTGACAACTGATGCTTCGAAATTTGCCCTTGGAGCCGTTCTCTCTCAAAATTCTAAACCAATATGTTTTGCCTCCAGAACCCTGAACGAAACAGAACAAAAGTACAGCACAATTGAACGCGAATTACTCGCCATTGTTTGGGCCACCAAACATTTTCGACCTTATCTATTCGGTACCAAATTTCTATTATACACAGACCATAGACCTCTTATCTGgctaaaaaatctaaaggaaCCCAATTCTAAACTGACCCGTTGGGCCCTCAAATTagaggaatttaattttgatatccaATACCTCCCAGGTAAATCCAACAAGGTCGCAGACGCCCTTTCTAGAATTCAAATACACCCTACTTCTGTAAAGGATTTAACCCTCGAAATTtccaaacaaaacttaaatGAAATCCTACAACCAGAGCTTAACACCCCTGAACCAATATTAGATAATATCAGCATCTTACCTGAACGAGCCGATTCCCCTAACTTAGAAGACTTCATGACAATTCCTGTATTCATACCAccttctgaaaatattgaaccTCTAAAAACGCATGACCAAATTATTGATAATGATTCTTTACCTGATACTGTGCACACACAAGCCAGCTCTACACCTGTTATAGATATCTCAGAAAAACCActacaacatttcaaaaatcaaattgaatttattatggCCAAtattcccaagaaaatcaaaattacaactttTGACAACAATAAACACATCTCAGTATTCATTAACGAATCaaacaaaagaattaaatttaacgaaCTATTAATTGAACATTGCCAACCAAATACAGACTATTATTGCCATTTTCTTTCTGATCAATTATACAACGAATTTTCCCAATATGTTAATGACATAACCAATGACAACACACCCAAATTTCACCGATGTATGACACAAGTAACCTATGTCACTAATCCCGATGATCGACTAGAACAACTACGACTCTATCACGAAGGAAAAACCAATCATCGAGGCCTTTACCCGTTAATAAAAGGTACAGCCCTCTTAAAAGACAGTGAATGGACACTTGTGAAAACCCTTGACTATACCCCTCTCCTACAAAACTATGACCATCTAAAAACTAATATACAAAGAACCATTAAAACCCTTCAAGGACGCCGTTACATCCTCCACGAGCACCTCAAACCTTCCGCTAATTACCCATCTGATTATTACAACACCCACGACAATCAACTGTTAATTCTCGACCAATATCTCCAAAAATCCGATTTACTGATCAAACAACTCTTTCCTGAAACACAAATCACCCGGCCTAAACGTGAACTTTTTGACGGCCTTGGAACAGTCATCAAATTATTCACGGGTAACCTTGATGCGAGAGATGGTAAAAGATACTCTGAAACCAttgaaaaattaaccaaaactaCAGACCTACAGAAAACGATTTTAGAAGAACAAACTGAAAGAAAATATCCACTTAATGTATGGATAAGCGAAGATCAAACCGCAATAGTAAAACGAATACAATACAatgccaaaataaataaaatggtagGTTTTGTACTTCCTTTAGACAAGCATGGATTTCCTCGCACCAACGTATTTGTCGTTCAATCTGTGAAAGACATAGAAAAAGCCTTTAGAGAAGAATGTATCTCTAACAACGCATATGTTTTTATGGCGCAGCCTTTAGTAGAAAACGCTCCTGCTTTCTGCTTAGCAATTTTCGGAAGCAACAATAGGTTCACTGGTGACGATGTTTTGGATCGTTGGAAATTTATGGAACAATTAGCAGCACAACATGGGATAACCATAGAGGGCTATTCCACTGACGGAGACCCTAAATGTTTAAAAGCAATGAAAATCAGGGCTCAGTTACCACAAATCCAATTCGAAGATCTAAATGATACTATAGAATCTCCGTACAAACCATATTTTCAGgcTAAATGGAATATCAAAACTCCGGTCTTCATTCAGGACACAGTTCAGATTGGAACAAAGTTGAAGACGAGACTTTTAAAACCTGGTATAATTTTGCTGATGGGTGAATATTTTGTAAGTACGTctcatattgaaaatttgataaacaACGTTTCGAAAGACAAGCACCTTCTATGCCGTAGTTACTTACAAAGTAAAGACAAAATGAATTTTGAAGCTACGGATAAGCTCTGTTCGTTTAAAGTAATTGATCTGATGAAGAATATACCAAAAAGTGAAGCCACAGTACAtgtAAAAACGGTACGCAATTATGTGAGAAAGGGTCCACGTCGTGCGTACAGTACGGAACAGTTGCAAACCGCACTAGCATCTGTAAGAAATGGCAGAACAACCATAAAAGGAGCTGCCCTATTATATGCAATCCCAAGAGAAACATTAAGGGACCACCTCAAAGGTCGTCGTGGTACCAAGGGTTCGGATACAGGAGGGTGTGGTCGAGGCACTGCATTACCATTGGAGTCCGAAAATCAATTAGCAGAATGCCTTCGGGTCATGGCGAGGAACGGTTTTGGTTTAACAAAGTTTGAAGTATTAGAACTCGCTCAAAGTTATGTAAAGAGGACTGGAGTACAAACGCCCTTCAAAAATGATCGCCCAGGAATGGACTGGTGGCTATCTTTCAAAAAACGACACAAGTTGTCTATTAAAAAACCAGAAATTCTTGGACATGCAAGAAAAGTTCAAGGTTGCGACCTTTTTGTAGTGTACGAATTTTTTGATCGCATTGATAAGTCGATAAGAAATCTTGGTCTTATCGATAAACCTGAACGGATTTACAATTGCGATGAAATAAGTTTTTGCCATGATCCTACAAGGACAAAAGTCATTGCCGCAGTTGGTAAGCCATGCCACCGGTACACTGCTGGCACCTTCAGAGAAAATACAACTGTACTGGCATGCGTAAACGCTGCTGGTGACAAATTGCCACCGCTCATTGTATTCAAAGGAAAAAACTTGTGGGACAAATGGATCCCAGAATCAGGAACTTATCCCAACACTTCATTTACGTCTGCACCAAAAGGGTGGATGACAgctgcagtttttgaaaattggttcaaaaatgaatttttactgCATATTGGCGATGTAAGACCAGTTATGCTCATCGTTGACGGACATACAAGTCACGTTTCTCCACAAATAATACAGCTTGCTTTAGAACATCAAGTAGATATACAGAAACTGCCACCTCATACTTCTCATTTGCTGCAACCTCTTGATGTGGCTTGTTTCCGTGGTCTTAAAATCAAATGGGATAATATCATAGCGGTACGGCAAAGAACAAATGTTGGCAAGCTTCCGTCCAAAACTGATTTTGTTAAACTTCTAGGATCTGCATTAACAGAATCCAACATAAAAAGTGGCTTTAAAGCAACAGGAATTTTTGATTCTACTTGTGGAACAGACACGAAGGTTAACAGACATGCTATAgatacttcaacctttaatcctaccaaagaaTTAGACAGGTATAGAGTGTACATGAAAAATGGAGAAAATGCAAATGCCGCTAGCGCATCTACCTCTAATTTGCCAGAACGAGCTCAAGAGGAAGCCGCTGCGGATCGAGCTGAAGAAGGAGCTGCTGCGGAACATGCTGAAGAGGCAGCTGCTGCGGAACATGCTGAAGAGGCAGCTGctATAGGGAAAGAAGACACCAATAAAGTAATAGCTGGGGAAGAGAGCCTACATAATGAATCGGATGATAATGGGCAAAAAGTGATAGATTTTGCCACTGCTAAAGAAATGAGAATAAAAAGCACAATGCTGAAAAGAAAGGATATCCATAAAGCTACATGGATCAGTCCagatagaaaaacaaaaaaccaaatagaTCATGTAATAACACAGAAAGTCCATGCAAGCAAGATAACTAACATAAGGACATACAGAGGAGCAGATGTAAACTCGGACCATTTTCTGGTGGTGGCTAAAATAAAACAGACTACAACAAACACTatacaaagaaaagaaaaaagggCTAGGAGGAACATCGAGCAACTGAATAAAGAAGAAATacaacaaaagtacaaaaaaagtaCAAGAAATATCGAAGAAAACCAAACACAAAAGGAAAATGTAGATGAAGAATGGGAACAACTAAAACTAATACTAAGGGAAAGTGCCCAACAACTAGGAACAAAGAAACAGCAGAAGGGAAAAGACTGGTGGGACGAAGAATGTAGAATAGCAATTGAAGAAAGGAAAGCTTTAAGAATAGAATTCCTGAAAACAGGAAAGCAGGAACTGTATGAAGAATACAAAAGAGCAAGGAACAAAGCACATAATTTATGCagagaaaaaaagagaaaaTATAAAACCATGggactgaaaaataaaaaaggagattTCTGTTTGGAAGAGCAAGAAATGGCGGAAATATGGGCCGAATACTTCAAACAGACACTAACAGAAAATAATCCAAAGGAAAAAGAGACACCACAGCCACAGACCATACAtggaaaaatgacaaaaattccaCCCTATGAAGAAGTGATAGAAatagttacaaaattaaaagccaATAAAAGCCCAGGATCAGACAAAATTGAGGCCGAACTCATAAAATATGCAGACGAAAAAATACTGCAAAGACTACATCAACTAATAACACAGAtctggaaaacaaaagaaatgccAACCGAATGGACAAAAGCGATCTTGTGTCCAATTTATAAGAAAGGCAGCAGAAATATAGTATCAAACTATAGACCAATAGCACTGCTAAACGTGGCCTACAAAATTCTAGCtcaattaataaaccgaagGCTAAAACAAGAATCGGAACACAAAATTGGGAGATACCAAGCGGGGTTTAGAGACGGAAAATCTGTAATTGATCAGATCTTCATCTTACAGCAAAGCCACGAAAAATGTAGCCTGAAAAACATCCCCATTCACGCACTCTTCATAGACTTCAGACAGGCgtatgataaattaaaaagaccAGAAATTTACAAGGCGCTGGAAATCTTGGAAATACCGAAAGATTTAATAAATCTAGTAAAAATGACTCTAAAAGTTacaacaaatacaattaaatttaaacaagcttTATCCAAGGAATTCCAAAGTAACTCAGGCCTGAAACAAGGGGACCCTTTGTCCACAACAATCTTCAACATAGTGCTTGAAAATATACTAAGGAAAACTAATCTAAAAATGGAACAAAACATTATAACAGGACCCTACCAAATACTAGCTTACGCCGATGACCTAGTAGTTTTGGCAAGGACTAAGGAGGAACttaaaagaatcattaaaactATAGAAGAACAAGCAAGAAGGGCAGGTTtagaaataaatgaagaaaaatccaATTACACGATACTATGGAACAGAACACAAGAGGAAAACCAAAACCTAACTTTCCAAACAAGCAcagggaaaaaatttaaatttaaaatagttaataaaatagtGTACTTAGGGGTGCAGATGGCAAGTAGTGGTCAACAGGGAACTGACATAGACAGAAGACTAACAATGGGAATAAGATGTGCGGCATCCCTGGACAGTGTACTAAAAGACAAAAACatacaaagaaaaactaaaatcaggTTATACAAAACAGTGATACGACCAGTGGTAACGTTTGGTGCAGAAACCTGGGTAGTAacaaaaatatacgaaaataaGATCAATATATGGGAGAGAAGAatactaagaaaaatatttggcgGAATAGAAGAGAACAATGTATGGAGAAGGAGAACCAACCAAGAACTAGAGGAATTATACCAAGAACCAAATCTAAATACAGTCATTAAGCAAAGCCGTCTGAGATGGCTGGGACACATAAATAGAATGGAAAAGGAGGATCTAGTAAGAATAAGTTTAGAAAAGGAAGCAGAAGGGAGAAATAGGAAGGGTAGACCTAAAATGACTTGGTGGAGTGACGTACAACGAGATTTAAGAAGCTTTGGATTGACAGACTGGAAAGCTAAATCAAAAGACAGGAAAGCATGGAAACATGCAATAGAAGCCATAGGCCAAGAGGCCTGA
Protein Sequence
MLKENIIEPSESPYNFPIWVVPKKADASGKQKFRIVIDYRKLNAETIEDKHPLPNIETVLDTLGRAQYFSTLDLASGFHQIEIKPEDREKTAFSTEEGHFHFKRMPFGLKNAPAAFQRMINTALSGLAPLQCLVYLDDVIIFSTSLHEHLNRLKSVFERCRKTNLKIQLDKSEFLHKSVNYLGHVITPDGIKPNPDKIHSIKNFPLPKTRTEIKSFLGLFGYYRKFVKDFAKLTKFLTVCLKKDNKIIHSQNFIDSFNHLKTLLTNEPILAYPDFDKTFELTTDASKFALGAVLSQNSKPICFASRTLNETEQKYSTIERELLAIVWATKHFRPYLFGTKFLLYTDHRPLIWLKNLKEPNSKLTRWALKLEEFNFDIQYLPGKSNKVADALSRIQIHPTSVKDLTLEISKQNLNEILQPELNTPEPILDNISILPERADSPNLEDFMTIPVFIPPSENIEPLKTHDQIIDNDSLPDTVHTQASSTPVIDISEKPLQHFKNQIEFIMANIPKKIKITTFDNNKHISVFINESNKRIKFNELLIEHCQPNTDYYCHFLSDQLYNEFSQYVNDITNDNTPKFHRCMTQVTYVTNPDDRLEQLRLYHEGKTNHRGLYPLIKGTALLKDSEWTLVKTLDYTPLLQNYDHLKTNIQRTIKTLQGRRYILHEHLKPSANYPSDYYNTHDNQLLILDQYLQKSDLLIKQLFPETQITRPKRELFDGLGTVIKLFTGNLDARDGKRYSETIEKLTKTTDLQKTILEEQTERKYPLNVWISEDQTAIVKRIQYNAKINKMVGFVLPLDKHGFPRTNVFVVQSVKDIEKAFREECISNNAYVFMAQPLVENAPAFCLAIFGSNNRFTGDDVLDRWKFMEQLAAQHGITIEGYSTDGDPKCLKAMKIRAQLPQIQFEDLNDTIESPYKPYFQAKWNIKTPVFIQDTVQIGTKLKTRLLKPGIILLMGEYFVSTSHIENLINNVSKDKHLLCRSYLQSKDKMNFEATDKLCSFKVIDLMKNIPKSEATVHVKTVRNYVRKGPRRAYSTEQLQTALASVRNGRTTIKGAALLYAIPRETLRDHLKGRRGTKGSDTGGCGRGTALPLESENQLAECLRVMARNGFGLTKFEVLELAQSYVKRTGVQTPFKNDRPGMDWWLSFKKRHKLSIKKPEILGHARKVQGCDLFVVYEFFDRIDKSIRNLGLIDKPERIYNCDEISFCHDPTRTKVIAAVGKPCHRYTAGTFRENTTVLACVNAAGDKLPPLIVFKGKNLWDKWIPESGTYPNTSFTSAPKGWMTAAVFENWFKNEFLLHIGDVRPVMLIVDGHTSHVSPQIIQLALEHQVDIQKLPPHTSHLLQPLDVACFRGLKIKWDNIIAVRQRTNVGKLPSKTDFVKLLGSALTESNIKSGFKATGIFDSTCGTDTKVNRHAIDTSTFNPTKELDRYRVYMKNGENANAASASTSNLPERAQEEAAADRAEEGAAAEHAEEAAAAEHAEEAAAIGKEDTNKVIAGEESLHNESDDNGQKVIDFATAKEMRIKSTMLKRKDIHKATWISPDRKTKNQIDHVITQKVHASKITNIRTYRGADVNSDHFLVVAKIKQTTTNTIQRKEKRARRNIEQLNKEEIQQKYKKSTRNIEENQTQKENVDEEWEQLKLILRESAQQLGTKKQQKGKDWWDEECRIAIEERKALRIEFLKTGKQELYEEYKRARNKAHNLCREKKRKYKTMGLKNKKGDFCLEEQEMAEIWAEYFKQTLTENNPKEKETPQPQTIHGKMTKIPPYEEVIEIVTKLKANKSPGSDKIEAELIKYADEKILQRLHQLITQIWKTKEMPTEWTKAILCPIYKKGSRNIVSNYRPIALLNVAYKILAQLINRRLKQESEHKIGRYQAGFRDGKSVIDQIFILQQSHEKCSLKNIPIHALFIDFRQAYDKLKRPEIYKALEILEIPKDLINLVKMTLKVTTNTIKFKQALSKEFQSNSGLKQGDPLSTTIFNIVLENILRKTNLKMEQNIITGPYQILAYADDLVVLARTKEELKRIIKTIEEQARRAGLEINEEKSNYTILWNRTQEENQNLTFQTSTGKKFKFKIVNKIVYLGVQMASSGQQGTDIDRRLTMGIRCAASLDSVLKDKNIQRKTKIRLYKTVIRPVVTFGAETWVVTKIYENKINIWERRILRKIFGGIEENNVWRRRTNQELEELYQEPNLNTVIKQSRLRWLGHINRMEKEDLVRISLEKEAEGRNRKGRPKMTWWSDVQRDLRSFGLTDWKAKSKDRKAWKHAIEAIGQEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-