Ccup022314.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284489.1:23542403-23544403[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-08 7.1e-06 27.3 0.1 2 39 15 51 14 54 0.94
Sequence Information
- Coding Sequence
- aTGGTTCGCAAAGTAAAGGAGAGGTGTAGGGCGACATTCACGGCAGAAGAGATGACAACTGCAGTACAGGCCGTCATTGAGGGGATGAAACTAAGACAAGCTGCCTTGGAATACGGTGTCAAATTGCAAACCCTTCAACGATACGTGCAAAAAAAACGCGCAGACGATAGCTGTAAAATGGTACCAAACTACAATGTGAGACGTATTTTCACTTTAGAGCAAGAGAAGTCTTTGTGCGAGTATTTGAAAACCTGCAGCAAAATGGCCTATGGCTTGACAACGTTGCAAACACGACAGTTGGCGTACGAAATGGCCATTATGAACAACGTGACTATCCCACAAAATTGGCATTCCAATCACTGTGCTGTAATAGAGTGGCTAAGAGGATTTATGAAACGATGTGGAAGCTTGAGTATTAGACAACCTGAGGGTTGCAGTCTCTCTCGATTGActtcgtttaataaatatacagtcaacctttttttcgataatttggAGGCTGTCATTGCTAAAACCCCATCGGTCATTGAAAATGTACGCATTTTTAACTTAGATGAAACTAGTACTACAACTGTTCAAAAACCTAAACGAGTATTGGCCGAAAAAGGAGTTAAGCAGCTTAATAGCTGCACTAGTGGCGAAAGAGGTGTGTTGATTACAACGTGTGTTATAATCGGCGCAAATGGGTCTTTTTTGCCGCCAGCGATGGTTTTCCCtaggaaatttttcaaaatgcatATGATTGCCGGTGCACCTGCCGGTACTTTGGGTTTGGCTAACCCCAGTGGATGGATGAATGGGGAACTATTCAGCCAGGTCATGgatcattttataaaattttccaacagcTCGCCAGAAAATCCTTCGGTTCTTATATATGACAATCACAAGAGTCATGTTACTCTTGAAGTAGTGCAGAAAGCTAAAAACAATGGAGTTTCAATCCTTACACTTCCCCCACATTGTAGTAACAAATTACAACCGCTGGATGTTTCGGTATTCGCGCCGTTCAAATCCTACTACAATGCAGCGCTGGACAACTGGATGCTAAATCATCCAGGAACCCCCATAACAATTTATCAGATAGCACAGTGTGTAGGCGAATCGCATATGAAAGCTCTTACACCAAAGAACATTGCGTCAGGATTTCAAGCAACGGGAATCTTCCCCATTAACAGACATGTGTTTTCTGAAGACGATTTCCTAATGAGTGCCGTAACGGATAGGCCTTTTGAAGAACATTTATCAGCAGGAACAACCACGGCAGTAACTGAAAACGTTTCGCAAACTGAAACAGTTAAATTAGTCCAAAAACTATCCGAAGCCACATGTTCAATGGAGACGCATGACAACTCTGATATTGCAGATAGGAGAACATCATTTGTAAGCCCTCATGAATTCAGGGGCTTcccaaaaactgaaaaaagaaaaactacgagaaaaagaaaaactaaaaaaagcgCCATCTTAACAAATACACCGGACatggaagaaattaaaaacgcaaaaaaacttAACACACCTCGCCgtacaatttcacaaaaatccAAGAAGTTAATGCTAGAACTGAGTAGTGGACCTAAGAAGCAACATAAAAGTGTTGTGGACGAAGTTAGCGACTCTGATTCTACAGATGAGGAAGTTGTTTATGAAGAGTTTTCTGAAGGCGAGGAATATATTGAAACGGTCGATGTGAATACGgaagatatttctggaaaaattacACTAAATAGTTTTGTTCTGATTCGATTTCCCCAAAAAATACACTATGTTGCAAAGGTTACGAAAATTTATGATGAAAGTAATGAGCTGGAAGTTTCATATCTTAGAAAAAGTGGGAAAATGGAAGgcagttttatttttcctaaAGTGGTCGATGTCGCGACTGTCGCAAGAGAAGATGTGGTTGTAGTGTTACCGACTCCTACGAATATTGGCAACAAAAGATTATCttcttattataaattttcagtttcgtTTGAAAATATTCAGTTGCGATGA
- Protein Sequence
- MVRKVKERCRATFTAEEMTTAVQAVIEGMKLRQAALEYGVKLQTLQRYVQKKRADDSCKMVPNYNVRRIFTLEQEKSLCEYLKTCSKMAYGLTTLQTRQLAYEMAIMNNVTIPQNWHSNHCAVIEWLRGFMKRCGSLSIRQPEGCSLSRLTSFNKYTVNLFFDNLEAVIAKTPSVIENVRIFNLDETSTTTVQKPKRVLAEKGVKQLNSCTSGERGVLITTCVIIGANGSFLPPAMVFPRKFFKMHMIAGAPAGTLGLANPSGWMNGELFSQVMDHFIKFSNSSPENPSVLIYDNHKSHVTLEVVQKAKNNGVSILTLPPHCSNKLQPLDVSVFAPFKSYYNAALDNWMLNHPGTPITIYQIAQCVGESHMKALTPKNIASGFQATGIFPINRHVFSEDDFLMSAVTDRPFEEHLSAGTTTAVTENVSQTETVKLVQKLSEATCSMETHDNSDIADRRTSFVSPHEFRGFPKTEKRKTTRKRKTKKSAILTNTPDMEEIKNAKKLNTPRRTISQKSKKLMLELSSGPKKQHKSVVDEVSDSDSTDEEVVYEEFSEGEEYIETVDVNTEDISGKITLNSFVLIRFPQKIHYVAKVTKIYDESNELEVSYLRKSGKMEGSFIFPKVVDVATVAREDVVVVLPTPTNIGNKRLSSYYKFSVSFENIQLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00398901;
- 90% Identity
- iTF_00977461;
- 80% Identity
- -