Ccup007290.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284486.1:54318714-54321308[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.9e-08 9.2e-06 26.9 0.0 2 35 5 39 4 42 0.92 2 2 9.5 1.8e+03 0.4 0.0 25 33 716 724 715 725 0.91
Sequence Information
- Coding Sequence
- ATGGCTGATAGAGAAGCGAACATTAAGGAAGCTATAAAGGAAATTGAAGAACATGGCATGTCTAAGAAAAAAGCCtccaaaaaatttggaattgctAGGTCAACATTGCAGTTTCGTATGggcactaaatttaaaaaaccaggATATGGTCCTGCAGCACATCTGACAGAAGACGAAGAAAATGTGTTAGTCAATTGGATTATTACGTGTCAGCGTAGAGGTTTTCCCAAGCGGATAGAGGATGTACAAAAaaagtgtacaaaattttgtaaaagaaaAACATCTGAGCCGGTGACACAAGCAAGTGCCTGCATTAGTGAGTCAGATGTTAgaaaatggtttaatttaatcCAGAAAGAACTTGATGACCTAGGACACGGAGATGTTCTTCTTGATGAAACCAGAATCTATAATGGCgacgaaacaaattttttgctgtgtccaaaaaataaaaaagtcatCGCCGCTCGAGGAACCAAAAACGTATATGAAGTTGATAAAGCAACAGCGAAAGCATCCCTGACGGTAATGTTTACATTTGGAGCAAGTGGGGCGCTCACTCCTCCTATGATAATTTATCCATATAAGCGCAAACCACCCAAAGATATATTAGAAACCGTTCCTGACAGATGGGGTATTGGGTACTCCGACAATGGTTGGATGAAAGCGTCGATATTTTACCAGTATATAGCTAATGTTTTCAACCCATATCTTCTTGAAAACAATATAGAAAAACCTGTCATACTCTTTGTAGATGGGCACAAGACCTACTTAACGTTACAGGTTAATAAATTGTGTAATGATCTGGGTATAATTCTAGTAGCCCTGTATCCAAACGCCACCAGAATTTTGCAGCCAGCAGACGTTGCTGCATTCAAACCCCTAAAGACAGGATGGCAAAAGGGCATACTAGAATGGAGAAGGAAGCATCCCAATCTACAATTTACAAAGGAAAACCTTGCACCGCTATTGCATAAAGTAATAGAAAAACATATCAACGAAAATACCATCAAAAAGGGTTTTAGAGCAACAGGTCTATTTCCATGGAATAGCAACGCCATAGATTATTCTAAATGTCTGGGAAAATTAACCGGTGATCAATTATCAGTTAAACACACTGAAAAAACAGTGAATGCCGATTTAGAAAATGCACGAGTTCTAGATTTTGAAACCTTTAAATCAATAATAGGACACGAAACATTACAGTCCCTTGAAATGCAACACCTTGATAATGACAAATCtgaattgaaatatttgcagaaaatattaaaattttttactaaagaCAATGACAATCAAGAGTTTGACTTCAATAACATGCCTGTAGACATTTTAGTCAATGATGTGCCTGTAGACATGTTAGTCAATGATGTGATTGGAGAAGTAGCAGATAATTCTGATAGCACTTATGTGACAGTTGAAAAGAGTGAAAATATGGATACCACCGAAAATGAGCTAAATATTGCTTTACAAGAATTTGATATTGCTATGGAACATATGGCTAACAATGAAACTGTTGCAAGTACACCATCAACTTCTGTAACGTTAGATGCTGACAAATCATTACCAATCACTCAAATTCTTGTTTGGCAAAAGACTCCCGAGAGAAAGAATataagaaaagtagaaaaatttcCATATGTGATTACTTCGGCAGCTTGTAGGGCGTTGGCAGAGAACAAGGAAACCAAGAGAAAAATGGAGGAGGAAGcgaaagaaaatagaaaaaagctgAGGTTAGAGAAGAAAAATTTAGTGAAGAATAAAACAGTCGGCAAAagaaataacaagaaaatatgcGTCCCTTCTGTTgcaaacgtcaaaaataataaatgtgaaactttgatggCTGTATCTaatGATGCAGGAAGTTCCATAGAAACACAATCCCAGATTGAGAATTTGACCACCGTCGAACAAATAAGTCCCGAAGAAACACAATCCCAGAATGACAAATTGACTACCAGCAAAGAAACGAGTCCCGAACAATCACAGTCGCATAATGAGAATTTTACTAcagtcacaaaaaaaattttagttaaaggAATGTGCTATGGATGTGGTAATAACATTACCACAAACAAAATGGGACGAAAGTGCTCAAGATGTCCTAGAAGTTTTCATTCTAATTGTGCCAATGACTGTATATTCGGAGTGCCAAGGACTGTGCTAACAGTGCCAACCACTATCAATTTTAGCTATCTTTGTTACTTACTTTAA
- Protein Sequence
- MADREANIKEAIKEIEEHGMSKKKASKKFGIARSTLQFRMGTKFKKPGYGPAAHLTEDEENVLVNWIITCQRRGFPKRIEDVQKKCTKFCKRKTSEPVTQASACISESDVRKWFNLIQKELDDLGHGDVLLDETRIYNGDETNFLLCPKNKKVIAARGTKNVYEVDKATAKASLTVMFTFGASGALTPPMIIYPYKRKPPKDILETVPDRWGIGYSDNGWMKASIFYQYIANVFNPYLLENNIEKPVILFVDGHKTYLTLQVNKLCNDLGIILVALYPNATRILQPADVAAFKPLKTGWQKGILEWRRKHPNLQFTKENLAPLLHKVIEKHINENTIKKGFRATGLFPWNSNAIDYSKCLGKLTGDQLSVKHTEKTVNADLENARVLDFETFKSIIGHETLQSLEMQHLDNDKSELKYLQKILKFFTKDNDNQEFDFNNMPVDILVNDVPVDMLVNDVIGEVADNSDSTYVTVEKSENMDTTENELNIALQEFDIAMEHMANNETVASTPSTSVTLDADKSLPITQILVWQKTPERKNIRKVEKFPYVITSAACRALAENKETKRKMEEEAKENRKKLRLEKKNLVKNKTVGKRNNKKICVPSVANVKNNKCETLMAVSNDAGSSIETQSQIENLTTVEQISPEETQSQNDKLTTSKETSPEQSQSHNENFTTVTKKILVKGMCYGCGNNITTNKMGRKCSRCPRSFHSNCANDCIFGVPRTVLTVPTTINFSYLCYLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00398948;
- 90% Identity
- iTF_00398948;
- 80% Identity
- -