Ccup011698.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284487.1:31813713-31821377[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0029 0.55 11.6 0.0 3 26 202 225 200 225 0.92 2 2 6.4e-05 0.012 17.0 0.0 8 43 306 340 304 342 0.91
Sequence Information
- Coding Sequence
- ATGTCATTACTCATtgctaaagaaaaatataatccTGTTTCATGGAAAAAGTGGGAGGAGCAGGAAAAGTCTGCAGCTTCTAATCAAAACAGTAATGTCGATGTAGATGCAGGGACATCCACTTCGTCAACTACAGTGGTAATTGAGGAAGATCAATTGGCTGCCAGCACTACAAATGTAACATTCGAAGAATTACTACTCAGCAATATGAAGAGAGATTTCAGCAACAGCAAACCAAAAAAGTTTGTATCACTAGGATCGTGTGTTATTACTTCAACAGAAGCAATTAATTTATTCCGAGAAAATGAGAAAGCTAAAGCTTTAAaggaaaaatctaaaaaaaaaataaaaaACGAAGATGAAACGGAAGAAGACGAAATGCTAGATATCGAGAATAACTACAATGCGAATGATGACCTGTTTCCAAATTTACAGCCTGGAGAATCAGTAACTCTTAATGTGCCTGTTTCAAATAATGACTATTTAATAGAGGATGATTTTTTCGTATTTAACAATATTGATTATGAAACAAATGATTTTtCCATTATGCCACGAACTTATAAACGGAAGGTAGGAAGCCGCAGATATGCAGATTATGATTCGGAGACTTTAGAAAAATGCCTTGATGATATCAGAACAAAGCGACTTAGTCAGCGAAAGGCTGCTCAGCAGTATGTATTTTCGTTGCAAGAAGAACAAAGTTTTATGAATCATTTAATCCAACTTGGTGACTATGGTTTCCCAATAACCGAAGAGGATCTGCAACAATGTGTGGAGAATTATCTAACAAAAACAGGCAGAGAAATTCCAAAATTCAAGGATAATAAGCCAGGACTCAAGTggATTAGACGCGTGTATAAACCTGGTCCAAGGGCCAAAAGGTGTCGAAAAACAAGTGAAGACGTAAAGAAAAGTGCAATAAGTGATGTGAAAAAAGGACTTAGCTTAGGTGAAGCAGCCAAGAATCATGATATAGACCATACAGTGATATACAggcgaattaaaaaaattgagcaacATGAACCAATACGACCAAACGGTGGACAGACAGTTTTACCTGCCAAGGTGGAAAAACTAATTTGTGAAAAGCTTATTCAGTGCGCAGAATGGGGCCAACCTCTGGATTCGTATGATTTACGCGTATTagtcaaaaactatttaaataatgcaGGTCGGAAGGTAAAACAATTTAAGGACAATATGCCAGGAAAAGAGTTCGCTATTGGATTTGTCCAAcagcataaaaatgttttagccGTACGATACTGCCAAAACATCAAACGGTCGAGGGCTGGTATTCAGCCTGAAGCTGTCAAATCTTATTTTGAGAGACTCCAAACATCACTAAATGATGTTCCACCTGAAAATGTCGTTAACTATGACGAGACAAATGTCACGGACTATCCATGA
- Protein Sequence
- MSLLIAKEKYNPVSWKKWEEQEKSAASNQNSNVDVDAGTSTSSTTVVIEEDQLAASTTNVTFEELLLSNMKRDFSNSKPKKFVSLGSCVITSTEAINLFRENEKAKALKEKSKKKIKNEDETEEDEMLDIENNYNANDDLFPNLQPGESVTLNVPVSNNDYLIEDDFFVFNNIDYETNDFSIMPRTYKRKVGSRRYADYDSETLEKCLDDIRTKRLSQRKAAQQYVFSLQEEQSFMNHLIQLGDYGFPITEEDLQQCVENYLTKTGREIPKFKDNKPGLKWIRRVYKPGPRAKRCRKTSEDVKKSAISDVKKGLSLGEAAKNHDIDHTVIYRRIKKIEQHEPIRPNGGQTVLPAKVEKLICEKLIQCAEWGQPLDSYDLRVLVKNYLNNAGRKVKQFKDNMPGKEFAIGFVQQHKNVLAVRYCQNIKRSRAGIQPEAVKSYFERLQTSLNDVPPENVVNYDETNVTDYP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -