Ccup047356.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284494.1:37851501-37852106[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-09 3.1e-07 31.6 0.0 2 42 14 53 13 56 0.91
Sequence Information
- Coding Sequence
- ATGGGTAAAACATGTCGTGGTATCCGTGCTAAGTGGAGTAAAGAAGATATGCAAGAGGCATTAAGGCTGATTAGAGAAGGCTTGTCGCAGCGGTACGTTGCACAACATTGTGGCATTCCTCGTCGTACGTTGAGAAGTCATGTAAAATCTAGAACATCTTCAAGATCACTTGGAAGACCACTAGTTTTGACCCAACAGTTAGAGGATGAGTTGGAAGCCAAAATTGTCCGATTCGCAGAAAGAGGGTTTCCTTTAACTCCCAAATCCCTAAGAAGAAGTGTCTATTCTTTCGTTGACAAACGAAGAATtccaaataaattcaataaagaGAAAAAGGTAGCAGGAAGGGAATGGTACAGATCCTACATGAGGCGCCATCAGAACTTATCTCGAAGAAAAGCACAAAATATGAACCCTGCTCGGGCTCAAAAGTTGAACAAACCTATTGTGGAAgattatttcaagaaattagATGCCCTTTTTGAGAAGACGGGATTAAAAAATAACCCACAAAAGGTGTATAACATGGACGAAAAAGGCTGTCGACTTACCCTGCATCACCAGCAAAGTGTTATTGCAAAAAAGGAGCAAAAAGAGTTCATCTAG
- Protein Sequence
- MGKTCRGIRAKWSKEDMQEALRLIREGLSQRYVAQHCGIPRRTLRSHVKSRTSSRSLGRPLVLTQQLEDELEAKIVRFAERGFPLTPKSLRRSVYSFVDKRRIPNKFNKEKKVAGREWYRSYMRRHQNLSRRKAQNMNPARAQKLNKPIVEDYFKKLDALFEKTGLKNNPQKVYNMDEKGCRLTLHHQQSVIAKKEQKEFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00398955; iTF_00398945; iTF_00398953; iTF_00398957; iTF_00399004; iTF_01243328;
- 90% Identity
- iTF_00398945;
- 80% Identity
- -