Ccup047450.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284494.1:39784673-39786169[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-11 6.4e-09 37.0 0.1 1 43 17 59 17 60 0.91
Sequence Information
- Coding Sequence
- ATGCCAACCGAATATAAGCGCACCGGAAGTTGTTCCCGTGCCAGCTGGACCGAAGAACGATTAACCGAAGCAGTTAATGCTGTAAATGAAAATAGAATGCAAGTGAATGAGGCTGCTAGAGCTTACAATGTACCGGCAACGACTCTgcgaagaagaaaattaaaaaataatatgaagAAAGGAGCCCTTGGACCAAGCTCAACATTAGGCTATGAAGCTGAAAAAAAGCTGGTTACACATATTCTGAAGCTCCAGAAAAATGGGTTTGCTCCTACGAGAACTGATGTCCGATCTATGGCCTTTAAATTAGCTGAACAGTTGGGCATCGCACAtcgttttaataaagaaaccgaACTGGCTGGATTTCCATGGCTGcagttgtttttgaaaagaaactcAAGCCTATCAGTGCGGAAATCAGAAGGAGTCTCGATTAATCGATCCTTAGATGTTGGGGATTATTTCCGATTGTTGGAACAGATCCTTGTTGAGAATGACCTTTTGCGCAAGCCAGGGCATATTTTCAACATAGATGAAACGGGTTTACAACTAAATAACAGACCTGGACACGTTATTGCTAAGAAAGGATCTAAGAATATTGCGGGTATCAGCTCTGGCGAAAAAGGAGAAACAATCACAGTGATAACCTGCTGCAATGCAGAAGGTGTTTTTATTCCTCCTACTTGCGTAATGaagggaaaaaacaaaaaacaagagtTCGAAGACGGTATGCCACCTGGTTCGTTGGTTTATATGTCACAAAAATCAGCCTACGTCAACAGTGACATATTTTTTCAATGGCTGAAAGATCAATTTGTACCCAGGAAGCCTATAGGAACGGTTTTGCTGTTGCTAGATGGTCACGCATCCCATTGCAGTAACATTGAAATGCTGGAATACTGTGTcgaacaaaacattattttgtattgcCTACCAAGTCATACGACGCAATTCTTACAGCCCCTGGATAGATGCTTTTTCAAATCCTTCAAATTAAACTACTACACCGCATgcaatttatacattaaaaataatcccGGAAGGAAAATCACTAGACTACAATTTGGGAAATTACTTGCTGCAGGGTGGAATAAGTCTGCGACTGTCAGTAACGCCACGTCGGCTTTTAAAGCTACGGGAATTGTACCATTCAATCCTACTGCAATCCCCGACGATGCCTATTTAACTGACTTCAATAACGTGACAGTTCCTGACATAATAAGGGGAGCTGATGATAATCAGCAACCTGATAATCAGCAACCGTCCTGCAGTTGGCAGAATCAGTTGAGAATTGCGCcagaaaaacaaagtaaacctGCTAAATCTATTAACAAACAAACTCCTAAGAAGCCTACTCCTGGGAAATTGCTCGATAGCATCTCTCACGTTCCAGTTGTTTCTGCTGCTGTTGCTTCAGTTCGACGAAGAGGTAAACAGTTGGCGGAGATTTTGACAGAAGAGGAAACGCTTaacgaaaagaaaaataaagcgATCTAG
- Protein Sequence
- MPTEYKRTGSCSRASWTEERLTEAVNAVNENRMQVNEAARAYNVPATTLRRRKLKNNMKKGALGPSSTLGYEAEKKLVTHILKLQKNGFAPTRTDVRSMAFKLAEQLGIAHRFNKETELAGFPWLQLFLKRNSSLSVRKSEGVSINRSLDVGDYFRLLEQILVENDLLRKPGHIFNIDETGLQLNNRPGHVIAKKGSKNIAGISSGEKGETITVITCCNAEGVFIPPTCVMKGKNKKQEFEDGMPPGSLVYMSQKSAYVNSDIFFQWLKDQFVPRKPIGTVLLLLDGHASHCSNIEMLEYCVEQNIILYCLPSHTTQFLQPLDRCFFKSFKLNYYTACNLYIKNNPGRKITRLQFGKLLAAGWNKSATVSNATSAFKATGIVPFNPTAIPDDAYLTDFNNVTVPDIIRGADDNQQPDNQQPSCSWQNQLRIAPEKQSKPAKSINKQTPKKPTPGKLLDSISHVPVVSAAVASVRRRGKQLAEILTEEETLNEKKNKAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00398789; iTF_00398854;
- 90% Identity
- iTF_00398789; iTF_00398854;
- 80% Identity
- -