Ccup036256.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- bab2
- Assembly
- GCA_958336395.1
- Location
- OY284492.1:9638879-9643593[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6e-15 1.1e-12 49.1 0.0 2 42 361 402 360 405 0.94
Sequence Information
- Coding Sequence
- ATGCAGCAATACTGTTTGCGCTGGAACAATCACCAACCAAATTTCATTGCAGTATTTTCTAGTCTTTTAAATAACGAGTCACTTGTTGATGTTACGTTGGCTGCTGAAGGAAGGCATTTACAAGCACACAAAGTTGTTTTATCAGCTTGCAGCACCTACTTTCAGtcgCTGTTTACCATAAACCCTTGCCAACATCctatagttattttaaaagatgTCAAATTCTTAGATTTGAAAGTTTTGGTTGACTTCATGTATTATGGAGAAGTCAACGTTTCACAAGAACAACTGcctcatattttgaaaacggcagaaatgttgaaaattaaagGTTTAGCAGAAAAACCAGCAGATCAGTCGGCGATGAAATCTCAAAGTAGTTCGACTGAAAAAGCAGAGTTGTTAACTCCTGGAGATTCTAACTGGGGTTCAGATGATATACAAAGACAGTCATTATCACCTTCTCCATGTCCTTTATCTCCTGCTAGTAAAAgAAAAAGATTGCGAAAAACCTCAACGGGTTCGGGGTCAGGGTCAGCTGATAGACAATCGGAAGAACATGCTAGTGAGGTTACATTAACCTCACCTGGGGGAAGTATGCTTGGAACTGTGATAAAGCCAGATCCAGGAGGCTTCACTTCTGACTGCAGTACACCAATGCGAAGCAAACAGCACAGTACTGATTCAGAACCACATCGTGGTAGTTCACATGAAAGTGTTGAAGATCCTTCTCATCAAATTACTCTGCAAGTTCCACAACAAGATACTTCGCATAATTTGGACACATCTTCGTCACTCGATATTGCCGAACCTTCCTCAGTTTCTCAACAAACTGCTGCAGGATACCAGTGGGGGATTGTGGATGGAGCGTATCCACGGTTTGCCTTTTCATCGTGCCATTCTAACATTACTATACCAACTGACATGAATTACACCACATCCACCTTACCTCAATGTTCTGTTAATAATAATCCCAGTTCTGGCAGCGATTCATCTAACAGTACCATCAATCAGAATCACTTATCCGCATCTCCACCACAAGCGATACAGAAACGTAAAAGGAGTATTAATCCTCAAGCCGATGAAAATTTTGTGCGTGCTTTAGAAGCTGTTCGGTTTGGTGGAATTGGATTCTGCAAGGCAGCTAAAATGTATGGGGTTAATAATCGCACACTTTGGTTGGAGTATAAAAAACGTGGATATCCAAACAACAGGATAagtattaaaaacagaaaacaagaGTTTGTGGCGCCGATTGCCATTAATCCAAATCCAACGAGCCCTAACGCTACCACATCGATGAGTGATCAAGAAAACGACGTGCTTTGTGCTACAGCTAATCACCCCGGTACTGCTATTATTAGTGGAACGTTTTTGGACAGTCGTCATGTTGATTTATCGCCCATTTTACAAAGACCTAGATATTTGGATACTGTTAATATTAATGCGCAACATGCGCTTGGATTATCAGCAGTCAATTTTGAACAGATGTGa
- Protein Sequence
- MQQYCLRWNNHQPNFIAVFSSLLNNESLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTINPCQHPIVILKDVKFLDLKVLVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEKPADQSAMKSQSSSTEKAELLTPGDSNWGSDDIQRQSLSPSPCPLSPASKRKRLRKTSTGSGSGSADRQSEEHASEVTLTSPGGSMLGTVIKPDPGGFTSDCSTPMRSKQHSTDSEPHRGSSHESVEDPSHQITLQVPQQDTSHNLDTSSSLDIAEPSSVSQQTAAGYQWGIVDGAYPRFAFSSCHSNITIPTDMNYTTSTLPQCSVNNNPSSGSDSSNSTINQNHLSASPPQAIQKRKRSINPQADENFVRALEAVRFGGIGFCKAAKMYGVNNRTLWLEYKKRGYPNNRISIKNRKQEFVAPIAINPNPTSPNATTSMSDQENDVLCATANHPGTAIISGTFLDSRHVDLSPILQRPRYLDTVNINAQHALGLSAVNFEQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00838323;
- 90% Identity
- iTF_00399651;
- 80% Identity
- iTF_00399651;