Ccup024085.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284489.1:39218138-39223455[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-06 0.00032 22.0 0.0 2 35 5 39 4 42 0.91 2 2 2.7e-12 5.1e-10 40.5 0.1 1 43 696 738 696 739 0.91
Sequence Information
- Coding Sequence
- ATGGCTGATAGAGAAGCGAAAATTAAGGAAGCTATAAAGGAAATTGAAGAACATGGCATGTCTAAGAAAAAAGCCtccaaaaaatttggaattgctTGGTCAACATTGCAGTTTCGTATGggcactaaatttaaaaaaccaggATATGGTCCTGCAGCATATCTGACAGAAGACGAAGAAAATGTGTTAGTCAATTGGAGTATTACGTGTCAGCGTAGAGGTTTTCCCAAGCGGATAGAGGATGTACAAACaagtgtacaaaattttgtaaaagaaagTAATAGAAAAACTCCATTTCCAAATGGTTTACCTGGAAAAGGTTGGTACTATGCTTTCTGTAAGAGACACCCTGAATTATGTCTCAGAACATCTGAGCCGGTGACACAAGCAAGTGCCTGCATTAGTGAGTCAGATGTTAgaaaatggtttaatttaatcCAGAAAGAACTTGATGACCTAGGACACGGAGATGTTCTTCTTGATGAAACCAGAATCTATAATGGCgacgaaacaaattttttgctgtgtccaaaaaataaaaaagtcatCGCCGCTCGAGGAACCAAAAACGTATATGAAGTTGATCAAACAACAGCGAAAGCATCCCTGACGGTAATGTTTACATTTCGAGCAAGTGGGGCGCTCACTCCTCCTATGATAATTTATCCATATAAGCGCAAACCACCCAAAGATATATTAGAAACCGTTCCTGACAGCTGGGATATTGGGTACTCCGACAATGGTTGGATGAAAGCGTCGATATTTTACGAGTATATAGCTAATGTTTTCAACCCATATCTGCTTGAAAACAATATAGAAAAACCTGTTAATAAATTGTGTAATGATCTGGGTATAATTCTAGTAGCCCTGTATCCAAACGCCACCAGAATTTTGCAGCCAGCAGACGTTGCTGCATTCAAACCCCTAAAGACAGGATGGCAAAAGGGCATACTAGAATGGAGAAGGAAGCATCCCAATCTACAATTTACAAAGGAAAACTTTGCACCGCTATTGCATAAAGTAATAGAAAAACATATCAACGAAAATACCATCAAAAAGGGTTTTAGAGCAACAGGTCTATTTCCATGGAATAGCAACGCCATAGATTATTCTAAATGTCTGGGAAAATTAACCGGTGATCAATTATCAGTTAAACACACTGAAAAAACAGTGAATGCCGATTTAGAAAATGCACGAGTTCTAGATTTTGAAACCTTTAAATCAATAATAGGACACGAAACATTACAGTCCCTTGAAATGCAACACCTTGATAATGACAAATCtgaattgaaatatttgcagaaaatattaaaattttttactaaagaCAATGACAATCAAGAGTTTGACATCAATAACATGCCTGTAGACATTTTAGTCAATGATGTGCCTGTAGACATTTTAGTCAATGATGTGATTGGAGAAGTAGCAGATAATTCTGATAGCACTTATGTGACAGTTGAAAAGAGTGAAAATATGGATACCACCGAAAATGAGCTAAATATTGCTTTACAAGAATTTGATATTGCTATGGAACATATGGCTAACAATGAAACTGTTGCAAGTACGCCATCAACTTCTGTAACGTTAGATGCTGACAAATCATCACCAATCACTGAAATTCTTGTTTGGCCAAAGACTCCCGAGAGAAAGAATATaagaaaagttgaaaaatttccatatgTGATTACTTCGGCAGCTTGGAGGGCGTTGGCAGAGAACAAGGAAACCAAGAGAAAAATGGAGGAGGAAGcgaaagaaaatagaaaaaagctgAGGTTAGAGAAGAAAAATTTAGTGAAGAATAAAACAGTCGGCAAAagaaataacaagaaaatatgcGTCCCTTCTGTTgcaaacgtcaaaaataataaatgtgaaactttgatggCTGTATCTActGATGCAGGAAGTTCCATAGAAACACAACCCCAGATTGAGAATTTGACCACCGTCGAACAAACAAGTCCCGAAGAAACACAATCCCAGAATGACAAATTGACTACCAGCAAAGAAACGAGTCCCGAACAATCACATATGCCAACCGAATATAAGCGCACCGGAAGTTGTTCCCGTGCCAGCTGGACCGAAGAACGATTAACCGAAGCAGTTAATGCTGTAAATGAAAATAGAATGGGAGTGAATGAGGCTGCTAGAGCCTACAATGTACCGGCAACGACTCTgcgaagaagaaaattaaaaaataatatgaagAAAGGAGCCCTTGGACCAAGCTCAACATTAGGCTATGAAGCTGAAAAAAAGCTGGTTACACATATTCTGAAGCTCCAGAAAAATGGGTTTGCTCCTACGAGAACTGATGTCCGATCTATGGCCTTTAAATTAGCTGAACAGTTGGGCATCGCACAtcgttttaataaagaaaccgaACTGGCTGGATTTCCATGGCTGCAGTTGTGTTTGAAAAGAAACTCAAGCCTATCAGTGCGGAAATCAGAAGGAGTCTCGATTAATCGATCCTTAGGCATGAACAGAAAAGATGTTGGGGATTATTTCCGATTGTTGGAACAGATCCTTGTTGAGAATGAACTTTTGCGCAAGCCAGGGCATATTTTCAACATGGATGAAACGGGTTTACAACTAAATAACAGACCTGGACACGTTATTGCTAAGAAAGGATCTAAGAATATTGCGGGTATCAGCTCTGGCGAAAAAGGAGAAACAATCACAGTGATAACCTGCTGCAATGCAGAAGGTGTTTTTATTCCTCCTACTTGCGTAATGaagggaaaaaacaaaaaacaagagtTCGAAGACGGTATGCCTCCTGGTCCGTTGGTTTATATGTCACAAAAATCAGCCTACGTCAACAGTGACATATTTTTTCAATGGCTGAAAGATCAATTTGTACCCAGGAAGCCTATAGGAACGGTTTTGCTGTTGCTAGATCGTCACGCATCCCATTGCAGTAACATTGAAATGCTGGAATACTGTGTcgaacaaaacattattttgtattgcCTACCAAGTCATATGACGCAATTCTTACAGCCCCTGGATAGATGCTTTTTCAAATCCTTCAAATTAAACTACTACACCGCATgcaatttatacattaaaaataatcccGGAAGGAAAATCACTAGACTACAATTTGGGAAATTACTTGCTGCAGGGTGGAATAAGTCTGCGACTGTCAGTAACGCCACGTCGGCTTTTAAAGCTACGGGAATTGTACCATTCAATCCTACTACAATCCCCGACGATGCCTATTTAACTGACTTCAATAACGTGACAGTTCCTGACATAATAAGTGGAGCTGATGATAATCAGCAACCTGATAATCAGCAACCCATCTCTCCCGTTCCAGTTGTTTCTGCTGCTGTTGCTTCAGTTCGACGAAGAGGTAAACAGTTGGCGGAGATTTTGACAGAAGAGGAAACGCTTaacgaaaagaaaaataaagcgATCAAGCGAGCACAGAAGTCTAAGATCACCGAAAAGAAAGGAAAAGCTACTAAGAAACCCAAAGTCGccaagaaaatttcaaaaaagaattCGGAAAATCTATCGTCGTCGGACGAAGGTCAGGAAGCAATGTCATTGTGTGACTCTTCAGATGACTTGGACGACGATGATGAGGCTTGCACTGGTTGTGGAGAAATTTATTCAGAAAGAACAAAATCTGACGATTGGGTGAAATGCGTGAATTGCTCCAAATGGTTTCACGATTCTtgctcaaaatttgaaaatttttgccacAGTTGTGGTACTTTTATGTGTAAGAAAAAGTAA
- Protein Sequence
- MADREAKIKEAIKEIEEHGMSKKKASKKFGIAWSTLQFRMGTKFKKPGYGPAAYLTEDEENVLVNWSITCQRRGFPKRIEDVQTSVQNFVKESNRKTPFPNGLPGKGWYYAFCKRHPELCLRTSEPVTQASACISESDVRKWFNLIQKELDDLGHGDVLLDETRIYNGDETNFLLCPKNKKVIAARGTKNVYEVDQTTAKASLTVMFTFRASGALTPPMIIYPYKRKPPKDILETVPDSWDIGYSDNGWMKASIFYEYIANVFNPYLLENNIEKPVNKLCNDLGIILVALYPNATRILQPADVAAFKPLKTGWQKGILEWRRKHPNLQFTKENFAPLLHKVIEKHINENTIKKGFRATGLFPWNSNAIDYSKCLGKLTGDQLSVKHTEKTVNADLENARVLDFETFKSIIGHETLQSLEMQHLDNDKSELKYLQKILKFFTKDNDNQEFDINNMPVDILVNDVPVDILVNDVIGEVADNSDSTYVTVEKSENMDTTENELNIALQEFDIAMEHMANNETVASTPSTSVTLDADKSSPITEILVWPKTPERKNIRKVEKFPYVITSAAWRALAENKETKRKMEEEAKENRKKLRLEKKNLVKNKTVGKRNNKKICVPSVANVKNNKCETLMAVSTDAGSSIETQPQIENLTTVEQTSPEETQSQNDKLTTSKETSPEQSHMPTEYKRTGSCSRASWTEERLTEAVNAVNENRMGVNEAARAYNVPATTLRRRKLKNNMKKGALGPSSTLGYEAEKKLVTHILKLQKNGFAPTRTDVRSMAFKLAEQLGIAHRFNKETELAGFPWLQLCLKRNSSLSVRKSEGVSINRSLGMNRKDVGDYFRLLEQILVENELLRKPGHIFNMDETGLQLNNRPGHVIAKKGSKNIAGISSGEKGETITVITCCNAEGVFIPPTCVMKGKNKKQEFEDGMPPGPLVYMSQKSAYVNSDIFFQWLKDQFVPRKPIGTVLLLLDRHASHCSNIEMLEYCVEQNIILYCLPSHMTQFLQPLDRCFFKSFKLNYYTACNLYIKNNPGRKITRLQFGKLLAAGWNKSATVSNATSAFKATGIVPFNPTTIPDDAYLTDFNNVTVPDIISGADDNQQPDNQQPISPVPVVSAAVASVRRRGKQLAEILTEEETLNEKKNKAIKRAQKSKITEKKGKATKKPKVAKKISKKNSENLSSSDEGQEAMSLCDSSDDLDDDDEACTGCGEIYSERTKSDDWVKCVNCSKWFHDSCSKFENFCHSCGTFMCKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -