Ccup038875.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- bab2
- Assembly
- GCA_958336395.1
- Location
- OY284492.1:44236477-44258193[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.8e-11 1.3e-08 36.1 0.0 1 39 373 412 373 416 0.90 2 4 6e-12 1.1e-09 39.4 0.1 1 39 427 465 427 469 0.95 3 4 3.3e-16 6.2e-14 53.1 0.0 1 45 482 527 482 527 0.97 4 4 2.1e-15 4e-13 50.5 0.0 1 40 534 574 534 578 0.93
Sequence Information
- Coding Sequence
- atgTCGGGGCAACATTACTGTTTGAGGTGGAACAATTACCAAAGCAATATGACCTCAGTCTTCCACCAGCTTCTCCAAAATGAAGCTTTCGTGGATGTCACATTAGCTTGTAAAGATTTATCCCTAAAGGCACATAAGGTAGTGCTATCTGCATGTTcctcatatttccaaaaattgttgctgGAAAACCCATGCAAGCATCCCACGATAATTATGCCGCAAGACGTATGTTACGCTGATCTCAAATTCATCATTGAATTCGTATACAAAGGAGAAATCGACGTTTCCCAAGCAGAGCTGCAGtcCTTACTGAAAACAGCggatcaattaaaaataaaaggtcTGTGTGAAtcagaagaaaaagaaaattctgCATCCTCTCTTTTTACACCTAAAGGTCATCCAAAGATCTGTAAGGTATCCTCACCGAAACACTACAGAAAGTTAGATAATAACAAGAGACATAAATTTAGAGACTTTGATCAAGAAGATTTGTCAGATAGGGAAGAAGATATTAAGGATGATATAATACAGGGAAACACATCCGACGATGATAGTGATGCACCGTTAGTTGTTGATGAGGGACCAAAGAGAAAAAAACTGACACAGGCTCAAAACAAACCACTTAACATGAGCAGTCATGGCCTTTTGGCTGGACAGgCTCTGTTCTCTCAGTTGTGTGATAATGATGACTTCCCACCGGAGCCTCCGGCTCCTACAGCAACACCAGTTGGTCATGTTGATCTTCAAGAACATTCACCTACTCGCAATCTATTGCAGTCATCACATAGGACGGATTTATCagatgttcacataaaatatgaagatataaaaaaagaaacgaCTATCAAATTTGAGACACTTAGATCATACGACCATGACTCGATGATGGATATGGATGCAACTCATATGTCTGGACCCGATCATTCGATGGAAAGCCATGAAGATGCAGAGAGAGCTATGCATTCCATGATGGTCACGCCAGAATTAATGGGTATGATGCCCGGAGGTTCAGGAAGGCTagATTCATCGAATGGTGATAATGGTCAGTTAAAAAGTAATGGTCACTCAGATCATTTAACAAGTAGGGCACATGGTGGGGGACCTAAAACTTGGACGCAGGAAGATATGGAATTAGCTTTAGATGCCTTAAGAAACCATAACATGAGCCTTACAAAGGCTTCGGCAACATATGGTATTCCATCCACCACATTGTGGCAAAGAGCACATAGGTTAGGTATAGACACACCTAAAAAAGAAGGCCCCACTAAGTCATGGactgaagaaaatttaaattctgctCTTGAAGCTTTGAGAACGGGCACTATATCTGCAAATAAAGCTAGTAAAGCATATGgtATACCTAGTAGTACATTATATAAGATAGCTAGAAGGGAAGGAATAAAACTAGCAGCACCTTTCAATGCTGCTCCAACGACATGGTCACCTGAAGACTTAGAAAAAGCATTAGAATCCATTAGATCTGGTCAATCATCGGTTCAAAAAGCATCAACAGAATTTGGTATTCCCACTGGCACATTATATGGAAGGTGTAAAAGGGAGGGAATAGAATTGTCTCGTTCTAATCCCACTCCTTGGTCAGAGGATGCCATGGGTGAAGCATTAGAAGCTGTAAGGTTAGGGCATATGTCAATAAATCAAGCTGCGATTCACTACAATCTTCCCTATTCATCATTGTATGGAAGATTTAAAAGGGGCATTAAATATGAATCAGAAACCATCGATTCGAATAATTCAGATAGTCAGTCGCAGACAGATCCTCAAGTGCTCGTTATGGATTATCCCAATTCTCATCAACAGATCCAATATCAGCATCACTCGAATAGCTGA
- Protein Sequence
- MSGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACKDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCYADLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCESEEKENSASSLFTPKGHPKICKVSSPKHYRKLDNNKRHKFRDFDQEDLSDREEDIKDDIIQGNTSDDDSDAPLVVDEGPKRKKLTQAQNKPLNMSSHGLLAGQALFSQLCDNDDFPPEPPAPTATPVGHVDLQEHSPTRNLLQSSHRTDLSDVHIKYEDIKKETTIKFETLRSYDHDSMMDMDATHMSGPDHSMESHEDAERAMHSMMVTPELMGMMPGGSGRLDSSNGDNGQLKSNGHSDHLTSRAHGGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIKLAAPFNAAPTTWSPEDLEKALESIRSGQSSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYESETIDSNNSDSQSQTDPQVLVMDYPNSHQQIQYQHHSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003877;
- 90% Identity
- iTF_01284853;
- 80% Identity
- iTF_00399658;