Cvid006388.1
Basic Information
- Insect
- Cryptus viduatorius
- Gene Symbol
- -
- Assembly
- GCA_964006125.1
- Location
- OZ023222.1:5904202-5911377[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 6e-05 0.0054 17.5 3.3 1 21 33 53 33 54 0.96 2 23 0.00043 0.038 14.8 0.5 1 22 78 99 78 99 0.96 3 23 0.00064 0.057 14.2 1.7 1 23 107 130 107 130 0.98 4 23 0.0031 0.28 12.1 4.3 1 21 162 182 162 186 0.92 5 23 0.023 2.1 9.3 3.4 1 21 202 222 202 223 0.95 6 23 0.23 21 6.2 1.9 2 20 230 248 229 250 0.94 7 23 8.9e-05 0.0079 16.9 0.4 1 21 308 328 308 329 0.95 8 23 0.032 2.8 8.9 3.6 2 23 336 357 336 358 0.95 9 23 0.00042 0.037 14.8 1.6 1 23 486 509 486 509 0.98 10 23 0.0093 0.83 10.6 0.2 1 21 566 586 566 587 0.96 11 23 0.0018 0.16 12.8 6.2 1 23 595 618 595 619 0.97 12 23 0.00083 0.074 13.9 0.3 1 21 640 660 640 661 0.95 13 23 5.2e-05 0.0046 17.7 2.3 1 23 669 692 669 692 0.98 14 23 0.015 1.3 9.9 0.2 1 21 714 734 714 735 0.95 15 23 7.1e-05 0.0063 17.2 2.5 1 23 743 766 743 766 0.98 16 23 0.00057 0.051 14.4 0.5 1 21 823 843 823 844 0.95 17 23 0.096 8.5 7.4 0.1 1 20 852 871 852 873 0.91 18 23 0.0042 0.37 11.7 0.3 1 21 901 921 901 922 0.93 19 23 0.039 3.5 8.6 2.7 1 23 930 953 930 953 0.97 20 23 0.29 26 5.9 1.2 1 21 997 1017 997 1018 0.95 21 23 0.015 1.4 9.9 0.5 3 23 1028 1049 1026 1049 0.97 22 23 0.00073 0.066 14.0 1.5 1 21 1085 1105 1085 1106 0.96 23 23 0.0026 0.23 12.3 1.9 1 23 1114 1137 1114 1137 0.97
Sequence Information
- Coding Sequence
- ATGGATCCATCGTGCGCTTTCGTTAAAAGAGCTCTTAACAACACGACAAACTCGAAAGCATCTTCGGAGGATGGAAGAGAAGACGCGCCAACGGAGTATCGTTGCGATTACTGCAATTGTCCGTATTCCTCTCAGGGGCACTTAAAGCGTCACATTAACAAGGGGTGCTTCATGGATCCTTCATTCTCCGTCGAGGCAAGACGCACTCTCAACGTTATGGAATCGAGAAATTACGTGTGTCCGAGATGTTCTCAGGGTTACAAAAACAAGAGAACTCTCAATACTCATCTACGAATGGCGTGCGGTCGCGAGCCAAAGTTTCGTTGTCCCTATTGCGGCCTCAAGAGTAAACATCCACCGAATATCTACACTCACATCAGAAGACGTCACAAGGGAATGGACGCTTGTCTGATCGTTGATCAGGAGAAGGGCGAATTATACCTGACGATTCAGCGCGTCGATGCGAAAGACCTAAAGAGATGTTACACTTGCAAATATTGTATGAAGACCTTCATGCAGAGCGGCCACTTAAGGGCTCACGTTAAGGGTTCTTGTCACTGGAATCCTTCGGCAACGTGTCATCAATCTTCGCGGAATCGTCCGCATTCCTGCACTCAGTGCGGCTCAAGTTACATGAAACGATCGCATCTTATCTATCATATTCGTCACGACTGCGGACGCACGCAGAAGTGTTTTCGTTGCGAGAAAACGTTTCTTCACGGTAGCAGTTTGAGAAGACATCAAGTTCGGTGTCGGGAGCCTCCGCCAGATTCGAGAACTTCCGATCTGATGCGTCGATCCGATCGTTCAACGGTGGATCGTCGTTACTCGAACGTTCGGACTCGTGAACAACAAAGATATCTACAAAAATCATTCGGGAACATCGCTGCGAAACAACAGCATAGGGGACTCAAAGCGATCTTCGCGTGTTCCGATTGCGACGTGAGCTTCAGCACTAAAGCATCGCTCACCTATCACGTGCGACACAATTGCGGAAAGATGCGACGGTGCAGCTACTGCGGAAGTGTTTACAAGAGACTGCAGGATATGAAATTGCATTTCAAACGTCATCACGATAACTTACCTTACCAAGTGACGATTTACCTAAACACCAGTCGGACGTTCGGTTTGGCTCATCATTTTTCGCCACTGCGTACGAGTCATCAACAGTCGAGAGGTTTTCAGCCGAGAAGCGAAATTCCTCGCGTCTCCAGAAGAATTGTTGGAAGAAACAAAATCGATTCTTATCAGTACGCGACTCGCGGATATCGCGGTGAGGCGAGTACGAGTTCCGGTACATCGACGTACTGGGGACAGCATCAGCGCGGCTTCAGGATTCAAGAGTCCTCGTCGGGCGGCCAACAGAAGTTTCATTGTCCGCGATGCAACAGCGGTTACACGAGACTCGCCGATATGAAGACACACTGCCAGTTTCAGTGTGGCAAAGAGCCTCGCTATCAGTGTCCTTATTGCACGAAAAAAGCCAAATTCTCGTCTAACATGTATGTTCACGTGCGACGAATGCACAAAGACGAGAAACTCGTCATAATCGATCTTCACAAACAATTGTCGAGAGTCGTTTATCGCGAACGCGAGACGAATCAGCCCCGTACTGGATACGAATGTTATTCCGTCACCAGACTGTTGGCGGATAATCGTACGTACGTCCGTAACGCTTTCACGAATTCCGCGAGATTTCCATGCGCCAACTGCACCAGCGTCTTTGGACAGAAGCGAAGCTTAGTTACGCACATGAGATACGAATGCGGACAACCGCCGAGATTCAAGTGTCCGTATTGCGATCTAACGTCGAAGAAGACATCGAACGTTCACAAGCATATAAGAAGAAAACACCACTTCGCGATGGATCCACTGTTGCTGTTGAAGTCACGAAATTGGCTTCAAAGACAGAAGATCTTTCCGTGTCCGACCTGCAGCAGTTCGTACAGCCGTAAACCCGATCTGACGAAACATCAATTGTACGAATGCGGACAGCCGCCGAGATTCAAGTGTCCTTACTGCGATCTGAGATCGAAGAAGACGTCGAATGTTAACAAACACATTAGAACGAAACACAAGGAGATCTACGTGGATACGGAGACGTTAGAATCATTCGCTAGACGCGACGACCGCAAGGTATATCCTTGTCCAAGCTGCAACAGTGTCTACAATCTCAAGGGTACATTAACGAGGCATCAGATGTACGAATGCGGCCAACTGCCGAGATTCAAGTGTCCCTATTGCGATTATCGTGCCAAACAAAAATCCAACACACGTACGCACATTCGTAGTCGTCACGTTGGCCACGTAATATGTGTGATCGATCTCGCCGACAAGTCTTTCGAGGAATACGACGACGGAGTACTCGGAAAATCTAAGCTCGAAAGATGCCCCCGACGAACTCGAGGCTTTTCGAGTATTCACGACGAACTCCCGGGACCAAGCGCTCCAGCGAAAATTGTCAAGTATCCGTGTCCAAGATGCTCGAGTACGTTTAGCCGAAAGAACAATCTCGGGCGTCATCTTCAGTACGATTGCGGTCGTTTTCCAAGATTCCGCTGTCCTTACTGCGGCAATATGTCGAAGAGAACGACCGATGTTTACGCTCATGTGCAAGCTCCGAATTTATTCGACTTGGGATCGACCACATTCGCAACGGATTCGACGAGTCTGGAATGGAGTCAGGaaaatcgtcgacgatttCCTTGTTCGCAGTGCAACAGTGTTTTCAAACGAAAGGGCGGTTTGACTTATCACGAAAAATGGGAATGCGGCGTTGGTCCACGTTTCAGCTGTCCCTATTGTTACTATCGCGCAAGACACATATCGAACGCTCGAAGACACGTTAGAAATCGTCATCCCGACAAGGAACTCTATACGGTCGATCTACTCGATAAGAATCATTGGGTCGACTATCGTTGGAAATTTGCTCCAGAGAGTTTCATCGTGGATTCTTCGAATGTAACTTCCGCCGGCGACGGAAGAAATTATCCTTGTCATGGATGCTCGAGTATATTTAACGCcgtaaaaaatcttaaatatCATTTGAAACATCAGTGCGGAAAGGGTCGTAGATACGGCTGTCCATACTGCGAGCACACAGCGTCTCAAGTTTCGAACGCACGGGTTCACATACGTCGAAAGCATCGCGAAGAACTATACGCGAACGACTCGGAGTCTCGAGCGGCTATAGGCTTCAAATATTCCACCGGAGCGACGAGGAAGCCGGCTATTCGGATTAACAATTCGTGTTTTCCGTGCGATAACTGCAACAGCGTATTCAGCCGAAGGCACAATCTGCTGTACCATTTACGATTCGATTGCGGACAGTCGCCGAGATTTAACTGTCCGTATTGCGTCTACAGAACGAGACATACGTCCAACGTTCGCGCGCACGTGCGAAGGATTCATCCTGGACAACCCGTTCACGTTATCGATGTGCGCAATCCCAATGCTCTGTGA
- Protein Sequence
- MDPSCAFVKRALNNTTNSKASSEDGREDAPTEYRCDYCNCPYSSQGHLKRHINKGCFMDPSFSVEARRTLNVMESRNYVCPRCSQGYKNKRTLNTHLRMACGREPKFRCPYCGLKSKHPPNIYTHIRRRHKGMDACLIVDQEKGELYLTIQRVDAKDLKRCYTCKYCMKTFMQSGHLRAHVKGSCHWNPSATCHQSSRNRPHSCTQCGSSYMKRSHLIYHIRHDCGRTQKCFRCEKTFLHGSSLRRHQVRCREPPPDSRTSDLMRRSDRSTVDRRYSNVRTREQQRYLQKSFGNIAAKQQHRGLKAIFACSDCDVSFSTKASLTYHVRHNCGKMRRCSYCGSVYKRLQDMKLHFKRHHDNLPYQVTIYLNTSRTFGLAHHFSPLRTSHQQSRGFQPRSEIPRVSRRIVGRNKIDSYQYATRGYRGEASTSSGTSTYWGQHQRGFRIQESSSGGQQKFHCPRCNSGYTRLADMKTHCQFQCGKEPRYQCPYCTKKAKFSSNMYVHVRRMHKDEKLVIIDLHKQLSRVVYRERETNQPRTGYECYSVTRLLADNRTYVRNAFTNSARFPCANCTSVFGQKRSLVTHMRYECGQPPRFKCPYCDLTSKKTSNVHKHIRRKHHFAMDPLLLLKSRNWLQRQKIFPCPTCSSSYSRKPDLTKHQLYECGQPPRFKCPYCDLRSKKTSNVNKHIRTKHKEIYVDTETLESFARRDDRKVYPCPSCNSVYNLKGTLTRHQMYECGQLPRFKCPYCDYRAKQKSNTRTHIRSRHVGHVICVIDLADKSFEEYDDGVLGKSKLERCPRRTRGFSSIHDELPGPSAPAKIVKYPCPRCSSTFSRKNNLGRHLQYDCGRFPRFRCPYCGNMSKRTTDVYAHVQAPNLFDLGSTTFATDSTSLEWSQENRRRFPCSQCNSVFKRKGGLTYHEKWECGVGPRFSCPYCYYRARHISNARRHVRNRHPDKELYTVDLLDKNHWVDYRWKFAPESFIVDSSNVTSAGDGRNYPCHGCSSIFNAVKNLKYHLKHQCGKGRRYGCPYCEHTASQVSNARVHIRRKHREELYANDSESRAAIGFKYSTGATRKPAIRINNSCFPCDNCNSVFSRRHNLLYHLRFDCGQSPRFNCPYCVYRTRHTSNVRAHVRRIHPGQPVHVIDVRNPNAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -