Cvid018491.1
Basic Information
- Insect
- Cryptus viduatorius
- Gene Symbol
- -
- Assembly
- GCA_964006125.1
- Location
- OZ023228.1:6398003-6401216[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.3e-07 2.9e-05 24.6 0.9 1 23 191 213 191 213 0.96 2 18 8.3e-06 0.00074 20.2 2.0 1 20 219 238 219 241 0.95 3 18 0.00071 0.063 14.1 0.4 1 23 246 269 246 269 0.98 4 18 0.00017 0.015 16.1 3.2 1 23 275 297 275 297 0.97 5 18 0.00012 0.01 16.5 0.5 1 23 303 326 303 326 0.97 6 18 2.3e-05 0.0021 18.8 1.2 1 23 337 359 337 359 0.96 7 18 4.6e-05 0.0041 17.8 1.7 1 23 363 385 363 385 0.95 8 18 1.3e-05 0.0011 19.6 1.1 1 23 391 413 391 413 0.98 9 18 2.9e-06 0.00026 21.6 1.4 1 23 419 441 419 441 0.98 10 18 5.7e-07 5.1e-05 23.8 0.7 1 23 679 701 679 701 0.96 11 18 7.8e-06 0.0007 20.2 1.3 1 20 707 726 707 729 0.95 12 18 0.13 12 7.0 0.6 1 23 734 757 734 757 0.93 13 18 9.6e-05 0.0085 16.8 3.7 1 23 763 785 763 785 0.97 14 18 0.00097 0.087 13.7 0.3 1 23 791 814 791 814 0.96 15 18 1.1e-05 0.00099 19.8 0.3 1 23 825 847 825 847 0.96 16 18 5.9e-05 0.0053 17.5 1.9 1 23 851 873 851 873 0.95 17 18 4.6e-06 0.00041 21.0 0.9 1 23 879 901 879 901 0.98 18 18 6.9e-06 0.00061 20.4 1.7 1 23 907 929 907 929 0.98
Sequence Information
- Coding Sequence
- ATGGACGATTTCTTTCGAATTCCAAAGTCTCTTTGCTACTTCATGGTGAGACATCCTCCGCTCGACAAGAAGGCGACTTCAAGTCAACAGTCGATGAAGAAATCAGCGGTGGAGAAGAgacgcaacgaaaaaatgaagaaaaaatgtcgttcATCGACCGCCGACCAATCAAAGGAGATTCAAGAAGTGGGCGACGAAcgtctttcgaaaaaaatcggcgacaatgagaattacgaaaaagcgaaaaattgttcgtcTATAAGTGACGAATCCGTAAAAGGCATAGAGATGTCCGGTCTCAGCTCGTTGATAGATTGTTCTTCATTCGTCGAAGCAACGATACAACCGCCGCTTAAGAAGAGAAACAGGAAAAACGGTCCAAAGCAAAGTATCATCGAGAAGAAGATATTTTCATCTCAGactgaaaaatcgaagaaaaataagtcGCCGAAGATAGAGCGTTTTTCGGACGATGGTAACGACGAGGATTTGGACGATGTAACTTTAgatttacgagaaacgaatgCAACGAAGCGACGAAAATCAACGAAATCCCAAAAACCTACGACTTTCGAGTGCGAAACTTgcggccgatttttttcacgaaaaagcGACTTGAAAGTTCACATGGTAAATCACAGTACCGTGAAGTCTCACAAGTGCGACATTTGCGAGAAGCAATTCAAACGGAAATCAGCACTGAAGACACATATGCCGCTCCACAGCGGTGTTAAATATACTTGCGACGAGTGCGATTACGTAACGACGAGCAAAGTTGCCGTGAGGTATCACGTGCGACGAATGCATCGAAAGGACTTTAGATACAAGTGCGACGAATGCGGAAAGAGTTACATGTCGAATTGTGAGTTGAAGGATCACAAGACGAGTCATCTCGGTACTAAAAGTTTCATTTGCGAGTTCTGCGGTAAAGGATTCTTACAAAGATCGTCGTTAACGGCTCACAAGCGGTCGGTTCACGGTGTGGTGCTGAAGGTATTGAAAAAGGATCATCAGTGCAATATCTGCAAAAAATTCTTCGCCTCAGAATATCTTCTACAGAATCACATTGGGATCCATTCGAGGAAATTTCTGTGCACCCATTGCGGCAAAGAATTCGCGACGAACAATGGCCTCCAGTTGCACAATCGTATGCACACCGGTGAACGTCCATTTCAATGCCGTTACTGTTCCAAATCATTTGTGCGTTCGAATGCCCTCGCGGTTCACAAATTAACTCACACCGGCGAGAGACCATACGTTTGTGATCTGTGCGGCAAAAGTTTCACTCAGCGGACGACGATGATGGCgcatagaaaaaaacatcCAGGAAGTCATCCGCCGCCGCCTCCGACGCTGCTAAGCAAACTCGACAATAATGtcgaaacaaattcgTACATTGCGCCGGATCCGCTAGGGCCCGATTTTCTGACGGTAAAGATAATGGACGATTTCTTTCGAATTCCAAAGTCTCTGTGTTACTTCATGGTGAGGCATCCGCCGCTCGACAAGAACGCAACTGCGAAACTGCCAACTGAGAAGAACCCAAAAGCCGCGAGAAAACGCGGTACAGTGAAGAAAAAGTCTTCGTCTATCGTCAAGAAATTGAGTGAAATTCCAGAAGTGAAGAAAGAGCCGCTTTCGGACGATGAAAAAGGGTCCCAATCGTCGACGAATAGCAGAACTACCGACAATGGGAAGCCAGAAAAGCCAACAGATCCGTCGTTTACAAGCGAAGAATCCCAAAAAAACATACAACGGACCAATGACTCACCCGATGACTCTTTATTACACATGGAAACGACTAAAAAACAACCgctgaagaagagaaaaagaaaaagtgaacTTAAGCCAAAGAACGTCAAGAAAAAGGAATGTTCATCTCGagtcgaaagatcgaagaaacgtatatcgacgacgaaaaagagTTTTCCGAACGACACCAATAACGAGGATCTGGACGACGTTACCTTGGATTTGCGAGAAAAGAATACGACAGAGcggagaaaatttgaaaaatctccGACTCCGTCGATCTTCGTATGCGACatttgcggaaaaaattattcgcgcaaaagtaaattaaaaattcacatGGTGAATCACAGCACCGTGAAATCTCACAAATGCGATGTTTGTGGAAAGCTATTTAAGCGTAAATCAGCGCTGACGACTCACATGCCGCTACACAGTGGCAAGAAATATTCTTGCGATCAGTGTGATTACGTAACGACGAGTAAAGTCGGCGTTAGATTTCACGTACGGCGAATGCACCAAAAGGACTTTAGATACAAATGCGACGAGTGCGATAAGAGTTTCATGTCGAATTGCGATCTCAAGGATCACAAGACGAGTCATCTCGGCATCAAGAGTTTCATCTGTGAGTTCTGCGGACGCGGATTCTTGCAGAAGTCGTCGCTTGCCGCTCACAATCGTAAAATACACGGTGTGGTATTGAAAGTATTGAAAAAGGATTACCAGTGCAACATATGCAACAAATTTTTCGCCTCGGAGTATCTCCTGCAAAATCACGTCGGCattcattcgcgaaaatttttgtgCACTCAGTGCGGCAAAGAATTCGCAAAAAACGCACATCTGCAATTGCACAATCGTATGCACACCGGCGAACGTCCATTTAAGTGTCAATACtgcgaaaaatctttcgtaagATCAAACGCTCTCGCAGTTCACAAATTAACTCACACTGGCGAGAGACCATACGTTTGTGATCTTTGTGACAAAAGTTTCACGCAACGAACGACGATGATGGCTCACAGGAAAAAACATCCCGGAAATCatccgccaccgccgccgacACGATTGACAACGCCGATGAACTCTCCAATACCGTTGACTTAA
- Protein Sequence
- MDDFFRIPKSLCYFMVRHPPLDKKATSSQQSMKKSAVEKRRNEKMKKKCRSSTADQSKEIQEVGDERLSKKIGDNENYEKAKNCSSISDESVKGIEMSGLSSLIDCSSFVEATIQPPLKKRNRKNGPKQSIIEKKIFSSQTEKSKKNKSPKIERFSDDGNDEDLDDVTLDLRETNATKRRKSTKSQKPTTFECETCGRFFSRKSDLKVHMVNHSTVKSHKCDICEKQFKRKSALKTHMPLHSGVKYTCDECDYVTTSKVAVRYHVRRMHRKDFRYKCDECGKSYMSNCELKDHKTSHLGTKSFICEFCGKGFLQRSSLTAHKRSVHGVVLKVLKKDHQCNICKKFFASEYLLQNHIGIHSRKFLCTHCGKEFATNNGLQLHNRMHTGERPFQCRYCSKSFVRSNALAVHKLTHTGERPYVCDLCGKSFTQRTTMMAHRKKHPGSHPPPPPTLLSKLDNNVETNSYIAPDPLGPDFLTVKIMDDFFRIPKSLCYFMVRHPPLDKNATAKLPTEKNPKAARKRGTVKKKSSSIVKKLSEIPEVKKEPLSDDEKGSQSSTNSRTTDNGKPEKPTDPSFTSEESQKNIQRTNDSPDDSLLHMETTKKQPLKKRKRKSELKPKNVKKKECSSRVERSKKRISTTKKSFPNDTNNEDLDDVTLDLREKNTTERRKFEKSPTPSIFVCDICGKNYSRKSKLKIHMVNHSTVKSHKCDVCGKLFKRKSALTTHMPLHSGKKYSCDQCDYVTTSKVGVRFHVRRMHQKDFRYKCDECDKSFMSNCDLKDHKTSHLGIKSFICEFCGRGFLQKSSLAAHNRKIHGVVLKVLKKDYQCNICNKFFASEYLLQNHVGIHSRKFLCTQCGKEFAKNAHLQLHNRMHTGERPFKCQYCEKSFVRSNALAVHKLTHTGERPYVCDLCDKSFTQRTTMMAHRKKHPGNHPPPPPTRLTTPMNSPIPLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -