Carm031423.1
Basic Information
- Insect
- Cryptus armator
- Gene Symbol
- -
- Assembly
- GCA_963971235.1
- Location
- OZ020239.1:8813744-8821330[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.031 4.6 8.9 0.9 2 23 269 291 268 291 0.94 2 16 0.024 3.5 9.3 2.8 5 23 298 316 297 317 0.92 3 16 5 7.4e+02 2.0 1.1 1 20 371 390 371 392 0.83 4 16 0.2 30 6.4 0.2 1 19 404 422 404 425 0.89 5 16 0.0065 0.95 11.1 1.0 1 23 432 455 432 455 0.95 6 16 0.18 27 6.5 2.6 1 23 465 488 465 488 0.88 7 16 0.35 52 5.6 0.1 2 20 521 539 520 540 0.91 8 16 2.9 4.3e+02 2.7 0.7 2 23 549 571 548 571 0.89 9 16 0.02 2.9 9.6 0.0 3 19 638 654 636 656 0.93 10 16 2 3e+02 3.2 1.0 2 23 665 687 664 687 0.91 11 16 0.14 21 6.9 1.4 2 23 697 719 696 719 0.95 12 16 0.57 85 5.0 0.0 2 19 822 839 821 841 0.94 13 16 0.39 58 5.5 0.6 1 23 849 871 849 871 0.78 14 16 0.081 12 7.6 0.0 1 23 981 1004 981 1004 0.90 15 16 5.4e-05 0.0079 17.6 1.6 3 23 1027 1048 1025 1048 0.96 16 16 0.0017 0.26 12.9 0.9 2 23 1129 1151 1128 1151 0.90
Sequence Information
- Coding Sequence
- ATGATACCGATGGAGTGGAGATGGGAAATAGAAATGCAGAGACCAATGATGATAAATTGCTTGGGCAAGCAGCGTCGATTGACAAGTTCTTCGACGATAGGTTCGGAGCCCAAAAGTTCTTCTGAAACGAAAGCTCTCGCAATAGAGGCAAAGGCTCTAAAGGACAATACTATGGAAACGACAGTTTCGTCGACGTCTGAGACTAATGAACCAATAGATTTACGAAATCTTATTAAGGATGCGGAGAAGAAAAGTGACAAGACATCAACCGTTGATGATCCGTTGACGATATTCCCCATTGAGAATAATACTCCTTCGCTAAAGAACTGTACGGAACCGGAGATAGCGAATGAAGTTGTATCTTTACTAAGCGATGTAACTGCAACCgtacgagaagaagaagacgaaagcAAGAAATTTCTCGATGACCCGCAGCATCCAAAAAAGACTGAAGAATCTCCGCAGAAACGTATCACAAGAagttccgtgaaaaaaaatatcttatctATCGTGGAAACATCAAAAACTAATGAGGCTTCCAAATACAACGATGCAACAAATGAAAACGAACGAGAAGCGGAACTAAAAGCTTTGTATTCGTGCAAAGATTGTTATGTCCCGTTGCGGCGAATACACGTTCCGAAATGCAATAAAAACCGAAGTCGAGTTCAACGGAAAACGACTGGGTCTCGTTCCACCGGTTTATTGTGTTCAAATTCCCGCCGAGTTCGCGCACTTGTTACCGATCTCTCAGAGATCAAACCGAACCGCTCTGAACGCGTTACTGCACCGTCGAAACTTTGGCGGTGTACCTTGTGCCACGAAAACTTTCCCACCGAATCCAGTAGACAAATCCACGTAAATTTGTATCACACCGTAATTCAGTCTGATTTTTgcaacaaaaaatttacaacgaaACGAGCGATGTTTCGTCATTATAGTGTACATCACTTCCGGTACAGTGAAAACAAGACTTACTGCGTTTGCGGTACGAAACTCGTTGATATGTCAGCGATTCATCGACATTTTTATCCGTACACCATCGACTTCGTAGACACCGAAAAATTACCAGCGACGAACAACAACGCGTGCAAACCTTTACCGGCAAAGTTCGATTGCAAACAGTGCGGAGCAAAATTTTGGTTGAAAACGTGTTTGATATATCATCAGAGTGGAAACTGCGTATCTTTGAAAACCAAAAAGCGAAGTTTTACCTGTAAGGTGTGCGATACAAGATTTCTCAAAGCGCAACTACTTGAACAGCACGAAGTAAAGTACGCTCGTCCCGGAACCCATCCGTGTACCATATGCAGAACCGTTTTCAGCGGACCCCAACAACTAAGTTATCACTTTAAGTCCGCTCACAACTTGTATCCTCCGAAACCGTATCCGTTTCGTTGCAGCATTTGCAATCAAGGCTTCCGCCAacagatttacgaaaaaattcaccgAAAGCATTTGCATTCGGATGCAACAGTCGAGAAAAAGGAGTCAAGAGACGTTGAGCTCGACGAAGTATCTATAACCGATTCAGATGTTTCCGACGACGAGACGACGATGAAATGCAACGTTTGCGATCTCGAATTTTCCAGCGGCAAACGCTTCATAAATCATTTAGTTTATTACGATAATAGCGAAATAATAGAGTGCAGCATCTGTCTCGAGAAGTTCGAGGGCCAATATAAGGCTCATCGGCACAACAAACTCGTGCATTATTCGAGTAATTCGCAAAACGCTTTGACGCATCAATGCACGATTTGTCGGGACGTTTTCATGTGGAAGACACAGTTTCAAGCGCATCTGTGTCACGTACACGGCATCGCGCCGATGGAGACACGATTCATCATGAACAATCCAAACGCGGAGAGAAACAACAACCAGAAAAGTGGTTACCGAGATGTAGTCGATATCTGCAAGATTTGCGACATCAGTTTTCCGTCGCCGGTCCTCTTGGCGGATCATGAAATCGAGAATACGAATGATGGCGAATTAGTGTGTAATCAATGTTTAAGAAGATGCCGCACCGCATCGATACTGCTAGATCATCTCTCGCTAAATCACTCGAATATCACGATCCAAGACGGTGTAAAGTGTCGTCGCTGCAACGAGAATTTCCAAACGCCATCGGCTTGGGTATCACACGTGAAACATTTTCACTTTACTAAAGAGCCTTCGGAATTTTATTTCGAGAAGAATGCCAAGTCGACGGAAGAGGCTGAGGACAGTTTAAAATTCGAGTTGATCGTTCCGACAAATCATTCGATAACCAGCGGAATGACGAGTTACCGAATTAAAACTTCGCTCGATGAGACGGCCTACACACCGGTGTCTACGAAAGACACTCATGAAAGCGCCGTCGTTAGAAAATTCATAAAACTTGAAGAACCCGATGGGGAGACCGATTCGAAGACCGATTGTTGGGACAACAGAAAACCCAATGAATTCGTCAATGAGAACCCCTGGAGGTGCGCCATCTGTGTAGTAAGCTTTCCCGGACCTGCGGAACTTGCGAGACACGCTGCACTCTACTCGGATAACGGTCACTACATGTGCGAACTTTGCGGTCGAAGATTTGCCTGGTTGAGCATCTATCAGGATCACAAAAAGAAACATTATGAGGACGAAACCGACAAATTCTTCTGTCACACGTGTTACGAGGGATTCGAGACGTTGCAGTGCAGGATTTCGCATGAGACTCATCTGCATAAAAAATCACCGGAGGAACATCAAACTGAagacaaaaaaatcattcacgTTCAGCCGTCGAACTCTCTGAATAATCCCCGATCATCGATTCGTCCAAAACTTTCCTCGATCCTATCTTTCTATCAATCCGACTCGACAAACGAGTCACAATCAATTTCCCGCGACAAAGAAGACAAACGCACCGATTCGTCATGTCGGCACACGGAAATCTTTGACGACGAATTGTCGATGACTTACCAGTGTCCCGATTGTCAAGAAGAATATCCGACGCTCGAGCGAATGGACGAACATCTGACAATTGTGCACAACATGAAACAAGATACAGTCGAAGAATTGTCAGACGACAGAAACACATTTACTGCTTCTGTAAATTGCGAAATCTGCCATAAGAAATTTGTCAATAGAAATCTCTTAAGCGTCCATCAAAAAACGATTCACTCGATGCAATTGATTGAACGTAAGAGAGTCGTATCTGCTGCCGTTCAGAAAAGTTCCGTCAGAAAACTTCCAACGAAAAGACTTCTTTGCTTTGACAACGATCACACTTACACCGTGACGAAGAAATTAATTACAGTGCCGACGCTTGTTAGAAGCAAATGTGCGCCGTTAAAACCAAATACGCGCTCCGCGCTCCGCGCTCCGCGGAATAATATTCAAGCCGAAGACGCCAATCAATGTCGTTGCAGCCTTTGCGATATCGTCTTCAGAAACAGTACAGCGCTTCGATTGCACGAGGTGAAGGTTCATTGTTTGACAATTAACGAAAATCATCGGAACGACGTTACGTCGACGGAAGATAGTTTCGACTCTTCGAAGAGTACAATGCAGCAACTCAATCTTCTCGTTGGTAAATTGCCGATACCATCACAGAATCTAAACGGTGCAACGATCACCGTTGACTTCGAGAGTATTATGATACCCGCGACAACGTATGAATTCAATATTTCCGGATCGGAGAGtcagaaaaacatcgaatcacCAAAATTAGACGATTCGAAGTTGGAATATATAATCGATAAATTGCCGCCCGGTAATTATCAAGTCTCCGAATTGAAGGTTCTACCCTTCGCCAAGATCGACAAAAAGTTGCAAAAGCCACAAGATGACGAAACGGAAGAAGACGCAGAGCCTCCGGCAAAGAAACTTAAAACAGCGATTGATCCTGTAGTTTATCGCCAACTGTGCGAACAACATAACTGGATGCCGTCTGAACTTAAGGCGCCGGATACATCGACGAACACTCTGACGCCACAACTACGTTTCCTGTATAaTTCGATACGATGTTGCCAGCAACATGGTACCTCATGTACCGAGCGAATGGTTCCGAATGTCAGTACGAAAACTCATGTCTGGCGTCGACCCAGCAAAACAAATCAATCCCGACAATACATTCCCAAACGCCACGACTCACCCCTAAAAACTCTGACTTCCGATCTCGTATCGAGTTAA
- Protein Sequence
- MIPMEWRWEIEMQRPMMINCLGKQRRLTSSSTIGSEPKSSSETKALAIEAKALKDNTMETTVSSTSETNEPIDLRNLIKDAEKKSDKTSTVDDPLTIFPIENNTPSLKNCTEPEIANEVVSLLSDVTATVREEEDESKKFLDDPQHPKKTEESPQKRITRSSVKKNILSIVETSKTNEASKYNDATNENEREAELKALYSCKDCYVPLRRIHVPKCNKNRSRVQRKTTGSRSTGLLCSNSRRVRALVTDLSEIKPNRSERVTAPSKLWRCTLCHENFPTESSRQIHVNLYHTVIQSDFCNKKFTTKRAMFRHYSVHHFRYSENKTYCVCGTKLVDMSAIHRHFYPYTIDFVDTEKLPATNNNACKPLPAKFDCKQCGAKFWLKTCLIYHQSGNCVSLKTKKRSFTCKVCDTRFLKAQLLEQHEVKYARPGTHPCTICRTVFSGPQQLSYHFKSAHNLYPPKPYPFRCSICNQGFRQQIYEKIHRKHLHSDATVEKKESRDVELDEVSITDSDVSDDETTMKCNVCDLEFSSGKRFINHLVYYDNSEIIECSICLEKFEGQYKAHRHNKLVHYSSNSQNALTHQCTICRDVFMWKTQFQAHLCHVHGIAPMETRFIMNNPNAERNNNQKSGYRDVVDICKICDISFPSPVLLADHEIENTNDGELVCNQCLRRCRTASILLDHLSLNHSNITIQDGVKCRRCNENFQTPSAWVSHVKHFHFTKEPSEFYFEKNAKSTEEAEDSLKFELIVPTNHSITSGMTSYRIKTSLDETAYTPVSTKDTHESAVVRKFIKLEEPDGETDSKTDCWDNRKPNEFVNENPWRCAICVVSFPGPAELARHAALYSDNGHYMCELCGRRFAWLSIYQDHKKKHYEDETDKFFCHTCYEGFETLQCRISHETHLHKKSPEEHQTEDKKIIHVQPSNSLNNPRSSIRPKLSSILSFYQSDSTNESQSISRDKEDKRTDSSCRHTEIFDDELSMTYQCPDCQEEYPTLERMDEHLTIVHNMKQDTVEELSDDRNTFTASVNCEICHKKFVNRNLLSVHQKTIHSMQLIERKRVVSAAVQKSSVRKLPTKRLLCFDNDHTYTVTKKLITVPTLVRSKCAPLKPNTRSALRAPRNNIQAEDANQCRCSLCDIVFRNSTALRLHEVKVHCLTINENHRNDVTSTEDSFDSSKSTMQQLNLLVGKLPIPSQNLNGATITVDFESIMIPATTYEFNISGSESQKNIESPKLDDSKLEYIIDKLPPGNYQVSELKVLPFAKIDKKLQKPQDDETEEDAEPPAKKLKTAIDPVVYRQLCEQHNWMPSELKAPDTSTNTLTPQLRFLYNSIRCCQQHGTSCTERMVPNVSTKTHVWRRPSKTNQSRQYIPKRHDSPLKTLTSDLVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -