Carm034671.1
Basic Information
- Insect
- Cryptus armator
- Gene Symbol
- -
- Assembly
- GCA_963971235.1
- Location
- OZ020241.1:13692886-13696497[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.002 0.3 12.7 0.2 1 20 131 150 131 151 0.96 2 13 0.012 1.7 10.3 4.6 2 23 286 308 286 308 0.91 3 13 0.96 1.4e+02 4.2 0.8 8 23 354 370 354 370 0.94 4 13 6.6 9.7e+02 1.6 7.6 3 23 457 478 456 478 0.95 5 13 9 1.3e+03 1.2 0.3 1 23 528 551 528 551 0.84 6 13 0.0015 0.22 13.1 0.5 2 23 599 621 598 621 0.94 7 13 0.00033 0.048 15.2 0.1 2 23 645 667 644 667 0.91 8 13 0.0086 1.3 10.7 3.6 2 23 731 753 730 753 0.96 9 13 0.016 2.4 9.8 2.4 3 23 768 789 766 789 0.94 10 13 0.00044 0.066 14.7 0.1 2 23 834 856 834 856 0.93 11 13 0.14 21 6.9 1.6 1 23 936 958 936 958 0.98 12 13 0.00023 0.034 15.6 0.9 2 23 973 995 972 995 0.96 13 13 0.02 3 9.5 0.4 1 23 1068 1091 1068 1091 0.98
Sequence Information
- Coding Sequence
- ATGGCGTCGACAGTGGCCCGCGAGCAGTCGGCTATGATGATCGAGCAGCCATCGAGCGAGATCGACAGCGAGAGTTCGAGCGGTTGCGAGGATCGAGATCCTCGGAAAAGATTGCGCGAGGACGGCGACAACAATAGCAGCAGTAGCAGTCCAAAGAAGCGTAGAAAACAAACGACACCAGTGCGATTTCCAACGTCGCTGATGGGTAGCGGCGAACGGGCGGAGTCTGATGAAGAAGCGGAAGAAAACGAGGCGGACGAAGATCAGGAAGATCCCGAAGAAGCTGCCACAGGACCGAACGATGATGATCAGCTGGAAGGTAAGCCACGAAATATCCTGcaaacaacaacgacgacgacgacgacgaaagacGAAAACTTGAACAGCGAATTTCGTTGCCAATTTTGCGGTCTGTCGTTCGACGCCAAGGAGTCACTCGCTCGTCATCTCGAGTGCGAACACGGAACTATTAACAATACTGCGCAACAATCGTCTTTACACGTAGCGCCGAGCGTTTCGCCTATTTCCGGTCAAATCAGGGTGAAAATCGAACCGTCACAACAAATGTCCGAGGAACCCGAAAGTCCTGTTAATCTTTCGGGTTTAGGTATTAAAAATTTCGCGGCTACATGGTTGAACTCTCAGACAACGGGACAAGTTCAATCGCAATCCCAAAATGCCGAAGATTGGGCGTCATCAAGCGCGGTTGCTTCCGTAACTAATCATCTACAGTCTATCCCGTTTCCCGGTGCCCTGGCTCAGTACCTTCCTATGGCGGGTTTTTCCCTTGGCGATGCCGGACAACTGCGTCCGCCAGTTGGACCGGCACCAATTAGAATCTTCAATCCCGACGCTTACTGCGATCTTTGCAACAAGGAATTTTGCAACAAGTATTTTCTAAAGACGCACAAAGCCAACAAGCACGGTATATACGTTGATGGACCCGGTCAAAATTCCGTGGACAATAATATCTCCGGTAGTTTATTCGCCGGGGCTTTCGCGCCCGGTAATATCCAGATGGAGCAACAAATTCCGAGGCTCGAAGTTCCACCGCCAATGAAAAGATTCAAGAATGACGATTCACTGAGAAAACACAAGCAGAAAGTTCACAATGACTCGATGGACCATCAAGAGTCTCATTCCCTTCCGGCAACCGGTAGCAGCGTAGAAGACGATCGAGAGGTATCGAGAAATAGTCCAGGAGCTATGGAAGCATTGTTCAAGCAAGAATTCGGCATTGAACAGGAAGATTCAAAATTTATGCCAGCCCCCCGTCACCTATCGCCGCAGTCCAGTCAACAAGCCCGAGATTCGGGTTTCAACGTTGATCGGCTAAGAAGACTTGGCGTCATAAATCCTGAAGCCTTCTGCGAGATATGCTGCAAGGAATATTGCAACAAGTATTTCCTTAGAACGCACAAGATGAAGAGACACGGAATCTTCATACAGGATAGCGAAAAGTCACCCAGCAATCCCGGAACAGCGGCCAGTTGGCATCAGATTCAAACGAGCCCTCTGAACCTAATCGTTGATAGCAACGCCGGAAGTTCGTCTGAATCCGGTGACCGTCCAGTAGAAGACTTCGAGTGCAAACCCTGCGGTCTCCGTTTTCAAACGATTGGTATCTATCGCGCTCATCGGGCAAAGATGCACGAGATCGAAGAACAAACATCGCCGAAGAACGACTACGAGGTCGAATCCGGGGATCAAAGAACCGATTCGATTTCCGAAGACCTACAGAAGCTGCAGACAATGATTTTACAGTTGAACGGATTGGATCCCAGCAAAGCGTCGACTTGCGGTGTGTGCGGCAGAGAGTGCGACAGCAGAGCCGCCCTGAGGACCCACATGAGCCTCGAACATGGCGGAATTGCTGAAGAGCTATCGTCTCCCTCGCAGCCAAATGACAATTCCACCAACGGAACGTCAACATACTGCACTCTTTGCGAAAAAGAGTTTCCAACACCGGACGCCCTGAGGCAACATATCACCGATGAGCATCAACCAAACTCAAACAACATCACGCCGATTCCTCAGCCTCCCGTAGCCTCAGCTGCGGTCAGCATCCAACCTCCACCTGCACCTGTATCCACGTCATCAGTGGCCATTCCTCTGCCATCAACAGCTTCGGTACCAACGCCGAGCGCTCAACCGGAGCGCAAAGTAATCTCAATGACACCGACATCGAGCTACTGCGAGATATGCAACAAGGAATTGTGCAACAAATATTTTATGAAGACACACATGCAGCGGATGCACAACATCGAGATAGAGAACGGCTCACAGATCGGGGGTGTTATATGCAACATATGCAACAAGGAGTTATGCAGCAAGTATTTTCTGCGTGTGCACAAGCAAAACACCCACGGTATCGTCGACGAGGGAAGCACGACAGCGAACAAGCAGGAAGCATACGAATCATCGAACAACGACGACACTGCCTTGAAACCCGATCAGCTTGGCGATCTGAGTCATCGTTACTTCACGCACTTCACGGAAGTTTGTCCGATATGCAGTCGAAGATTTCGAAGTATAAAATGGCTGAAAGCCCATCTATTGGGTGAACATGGCAGGCCGGGAATTGATAAATGGCGCGAATTGGAACATCAGTATCAGAGCTCACCGAGAGGAGGTGTGAGATCTTCAGGATCGTCCGGCAGATCCGTCCAGCAAAATCAAAGTCTGAAGATCCCAAACGGGTTGGATGTCATGCAGCAACTCAAAAGCAACGACTACGCGGGATTGGGAAATCAAGTATTATCGAGTTTATTCGGCTCCTCGGTGGATGAACAAGCGGCGAAGAGTTATCGTTGCTCGTACTGCAGCTTCACCACGACTGTATTGCCATTTTTGTTTCTCCACGAGAGATCACACACAAGTCCGCAGGAGAACAATGCCGGGATCGAGAGTTCTCTGCAGTGTCCAATCTGCTCTCAAGCCTTTGGACAACCCGAACTCCTGCATCATCATCTATTAACGCGTCATCAGTTCTCGGGACTGCTGTCCCAATTTCAAACACCACTGGTGAATAATCCTAGAATGGACGACGGGAACGTTGGGAGGATCAACGAGTTGTACGAGAAAGGTGACTATGAAGGAAAGGACGAACGACGTCAGGCAAGTCCGCAGGTTTCTAACGTGGAAACGATTAAAAATCAGAAGACTGATGACCAGGCGGTACAGGTTACGCCACAGGGAGCTTTCAAGTGCGCTCAATGCGGCTACGCGACCGCAAACGTCAACAGGATAAGGAAACACATAAGAAAAGATCACAAGACTCTCGGTGATCCGACGGACAGTGTTATCGATGAACTCAGTAAGACTCTCAGAGACGTCGCGAACAAACATAAAGTACCGGCGAGTTACGCGATGCCGCAGGACATGAATTCTAATCCGGATGCTACGGTTATGCAACCTTTTATACTCGAAGAACGCGACGCAGGAAGAGTCGGAGAGGAGACTATCGCTGCTGAGAGACGCTTCGCGCCTGCTCTCGTTTATCTGCCGGTAAGAGTCAGGGTAAACAGTGTCCTTACCGCGTCCTTCACCCTCAGCCCCGCCTGA
- Protein Sequence
- MASTVAREQSAMMIEQPSSEIDSESSSGCEDRDPRKRLREDGDNNSSSSSPKKRRKQTTPVRFPTSLMGSGERAESDEEAEENEADEDQEDPEEAATGPNDDDQLEGKPRNILQTTTTTTTTKDENLNSEFRCQFCGLSFDAKESLARHLECEHGTINNTAQQSSLHVAPSVSPISGQIRVKIEPSQQMSEEPESPVNLSGLGIKNFAATWLNSQTTGQVQSQSQNAEDWASSSAVASVTNHLQSIPFPGALAQYLPMAGFSLGDAGQLRPPVGPAPIRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDGPGQNSVDNNISGSLFAGAFAPGNIQMEQQIPRLEVPPPMKRFKNDDSLRKHKQKVHNDSMDHQESHSLPATGSSVEDDREVSRNSPGAMEALFKQEFGIEQEDSKFMPAPRHLSPQSSQQARDSGFNVDRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIFIQDSEKSPSNPGTAASWHQIQTSPLNLIVDSNAGSSSESGDRPVEDFECKPCGLRFQTIGIYRAHRAKMHEIEEQTSPKNDYEVESGDQRTDSISEDLQKLQTMILQLNGLDPSKASTCGVCGRECDSRAALRTHMSLEHGGIAEELSSPSQPNDNSTNGTSTYCTLCEKEFPTPDALRQHITDEHQPNSNNITPIPQPPVASAAVSIQPPPAPVSTSSVAIPLPSTASVPTPSAQPERKVISMTPTSSYCEICNKELCNKYFMKTHMQRMHNIEIENGSQIGGVICNICNKELCSKYFLRVHKQNTHGIVDEGSTTANKQEAYESSNNDDTALKPDQLGDLSHRYFTHFTEVCPICSRRFRSIKWLKAHLLGEHGRPGIDKWRELEHQYQSSPRGGVRSSGSSGRSVQQNQSLKIPNGLDVMQQLKSNDYAGLGNQVLSSLFGSSVDEQAAKSYRCSYCSFTTTVLPFLFLHERSHTSPQENNAGIESSLQCPICSQAFGQPELLHHHLLTRHQFSGLLSQFQTPLVNNPRMDDGNVGRINELYEKGDYEGKDERRQASPQVSNVETIKNQKTDDQAVQVTPQGAFKCAQCGYATANVNRIRKHIRKDHKTLGDPTDSVIDELSKTLRDVANKHKVPASYAMPQDMNSNPDATVMQPFILEERDAGRVGEETIAAERRFAPALVYLPVRVRVNSVLTASFTLSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00905658;
- 90% Identity
- iTF_00398377;
- 80% Identity
- -