Carm022704.2
Basic Information
- Insect
- Cryptus armator
- Gene Symbol
- -
- Assembly
- GCA_963971235.1
- Location
- OZ020234.1:7488486-7492968[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00095 0.14 13.7 0.3 2 23 283 305 282 305 0.95 2 11 6e-05 0.0089 17.5 1.5 2 23 318 340 317 340 0.96 3 11 0.053 7.8 8.2 0.7 3 23 353 373 353 373 0.97 4 11 1e-07 1.5e-05 26.2 1.5 2 23 413 434 412 434 0.97 5 11 0.0074 1.1 10.9 0.4 1 23 439 462 439 462 0.91 6 11 0.39 58 5.5 1.9 2 23 538 559 538 559 0.97 7 11 0.0023 0.34 12.5 1.3 1 19 568 586 568 590 0.96 8 11 2.6e-06 0.00038 21.8 0.8 1 23 598 620 598 620 0.96 9 11 0.024 3.5 9.3 3.1 1 20 626 645 626 647 0.94 10 11 0.19 28 6.5 0.0 1 23 765 788 765 788 0.97 11 11 7.3e-07 0.00011 23.5 5.9 1 23 793 816 793 816 0.98
Sequence Information
- Coding Sequence
- ATGGCTGCGTCAGAATGGGATTATTCCTGCAGATTGTGCGGCGAGGAAAAGACAGAAATGTTTTCGATATTCGGCGAGGAGGGTACGCGTCGCAAAGTTGCTCACAAATTACGCGTTTGCTTACCAATAATGGTCTACAAAACTGATCCGCTGCCAAAGAAAATTTGTCAGTTTTGCGCCGCAAGATTAGACGATGTCTACGAATTTAGAGAATACTGTCTCAACGTTTACAAAAGTATGCATATGAAATTGTCGAACCTACGACATTTGAAAGCAGTAGAGATTTATATGGACGCCATGAATAATTCACCTGATCCTTGTCAAGTACAATTATGCAAAGAAAAAGCCCGTGCGCCGCCGCCTTTGGTGCCATTACCAGCTTCACTGCCGATGTACAAACCTGTTGCCATGCCGCTCGATAATCAAGAATCGTCTTCCAACATTGTCCTTGAAACGTTATCAGAATTACCGTGCGAAGTTGAAATTAAAGAAGATCCGAGCGATTCAATCGTCAGAGCTGACGCGGCAATTCAACCGGTTCACTTCGATGATCGCGAGTCCTCACCACCGGGAAGTTGCGAGAACAACGCTGACGAAGCCGACGTCATACTTGTTGACGATAACTCGATGCACGAGACTATGTCGGACACAGAAAGCCCGAGCAAAGATAAGCGAACGAGTATACTGGAACGAGTGCTAAAGGGATTTTTAAGCATCAATGACTGCAAGGAAGTTCCTGCCGCCACAAAGCTCACTTCGCAATGGGCGTGTACAGCGTGCAACGATTATCATTAcACAGAAAAAGGTTTGATAAAGCATATGCAATTGTTTTGTCCGCGACGTGTCACGTGTTCAAAGTGTCGTCGAGTATTCAATACCGTCGAGGAGCTCGCAAAGCACGAGGCAACTAATCATCTTAAGGTAAATCTCGATTTCGACGAATCCTTAAAAGAATGTCATCAGTGCGATCGAGAATTTGTTAGTTGGGAAATGTTGAGGAATCATCGACTTCGCGATCACACAACAGATTCTATGGAAATCGGAACGAACACGTGGTGTTCGATTTGCAATAGATTTTTCGCAACTGTGGAATTATACTACAGCCATAAACAACTCCATGAATCCGGAACGTTAACGTCGGCGGAGCCAACGACACAAACCGATCCGATTGAGGAGGTCAATCAAGAGGACAATGTCATAAAGAGGGAACACTTTATCGAAAGCGTCAAATCTCTTACCTGTCCAACGTGTGGTAAGGTATGCACCCAGCAAAGTGCTTTGTCGAACCACATGCGTACGCATGAGCCTAAGAAGCACAAGTGTGAAATTTGCGGTCGATCGTTTGGTCTCTTTATCCGGTTGGCTGCCCACAGACTCAGCGAACACGGTCAGCAGCCAATAATGTCTCCGATTACGGCGAGCGTTGAGCAGGAGGAAGCGTTGAATGCTGAAAGAGAAGCCCGAGAGGCCCGCGAAGCGAAGACACACGGAAATCGCAAACGCACCACTTCCGAGATTTTGGACGAGGATCGAGTCTCGACGGAAGAGTTATCGCCGAGTAGCGCAAAAGGTGGCGCGACACCGAACGCGAACTCGTTGAAGAAAGTCGCGCGATGCGGTATTTGCCAGCAGTGGTTCAACGATCACACGACAATGTTGACGCATCTTCAAACCCATTCGGACAATTTGACGACGAAATCATTCACCTGTCGCGTGTGCAAAAAAACTTTCAAGGAAAAGTGGCAAATGATAAGACACGAAGTGTGTCACAAGCGGAGCTCCACTTCGGGTCATACATGCGGAGTTTGCAACAAAAGTTTTACGGACAAAAGTCAACTCGCCGCTCACGAGACTATTCACAATTTGGACAAAACTTATCACTGTCCCAAGTGCAACAagatattttttaaagaattctCGCTTATGACTCACGAGTGCGCGGGGACGCCGGCGTTTGCGAAAAGAAATGCATCATCCGGAAAAATCGCACGGAAATCGTCACTCGTTTTAACGGGAGGCGTGAAGAAACGCAAAAATGCAAAGGGTCACGGAACGGTAGTCAATTCAAAGACAAGAAATCCTCACACGAGAACGAACGAGAAGGTAATGTTCCAACGTTTCAAGACGCGGATTGATGATACTACGATGGAATCAGTCGATGCGATGCCAAAACTGAGTCCCGAAACTTCGGCGAGTACGTCGATACCGATATTCGAACCGAAAGTCGAAATTAGCCACGAAGAGAGCCTCCCGACACCGATCAAGAGAACTCTCATCAGGACAGCTGGCGGATATCGTTGCGGTGTTTGTCAATCTCCGTTCGTTCTTCGGGAATTAGCAGTGGCGCATCTACGCTCCGCTCATCCCATGATGCCTTATCAATGTCCGTACTGCAAAAAACGTTTCACCACCCAATATACGTTTACTCATCACATAAAAACCGATCATCCCGACGAATCGGAGaagtga
- Protein Sequence
- MAASEWDYSCRLCGEEKTEMFSIFGEEGTRRKVAHKLRVCLPIMVYKTDPLPKKICQFCAARLDDVYEFREYCLNVYKSMHMKLSNLRHLKAVEIYMDAMNNSPDPCQVQLCKEKARAPPPLVPLPASLPMYKPVAMPLDNQESSSNIVLETLSELPCEVEIKEDPSDSIVRADAAIQPVHFDDRESSPPGSCENNADEADVILVDDNSMHETMSDTESPSKDKRTSILERVLKGFLSINDCKEVPAATKLTSQWACTACNDYHYTEKGLIKHMQLFCPRRVTCSKCRRVFNTVEELAKHEATNHLKVNLDFDESLKECHQCDREFVSWEMLRNHRLRDHTTDSMEIGTNTWCSICNRFFATVELYYSHKQLHESGTLTSAEPTTQTDPIEEVNQEDNVIKREHFIESVKSLTCPTCGKVCTQQSALSNHMRTHEPKKHKCEICGRSFGLFIRLAAHRLSEHGQQPIMSPITASVEQEEALNAEREAREAREAKTHGNRKRTTSEILDEDRVSTEELSPSSAKGGATPNANSLKKVARCGICQQWFNDHTTMLTHLQTHSDNLTTKSFTCRVCKKTFKEKWQMIRHEVCHKRSSTSGHTCGVCNKSFTDKSQLAAHETIHNLDKTYHCPKCNKIFFKEFSLMTHECAGTPAFAKRNASSGKIARKSSLVLTGGVKKRKNAKGHGTVVNSKTRNPHTRTNEKVMFQRFKTRIDDTTMESVDAMPKLSPETSASTSIPIFEPKVEISHEESLPTPIKRTLIRTAGGYRCGVCQSPFVLRELAVAHLRSAHPMMPYQCPYCKKRFTTQYTFTHHIKTDHPDESEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00398342;
- 90% Identity
- iTF_00398342;
- 80% Identity
- -