Carm028416.1
Basic Information
- Insect
- Cryptus armator
- Gene Symbol
- -
- Assembly
- GCA_963971235.1
- Location
- OZ020237.1:15053176-15056222[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0047 0.7 11.5 4.7 1 23 349 371 349 371 0.97 2 10 0.00015 0.023 16.2 1.0 3 23 382 402 381 402 0.97 3 10 0.00022 0.032 15.7 1.1 1 23 484 506 484 506 0.95 4 10 0.00022 0.033 15.7 1.2 1 23 579 602 579 602 0.95 5 10 3.8e-06 0.00056 21.3 2.9 1 23 638 660 638 660 0.98 6 10 0.0002 0.03 15.8 4.0 1 23 674 696 674 696 0.96 7 10 0.00019 0.028 15.9 4.7 1 23 702 724 702 724 0.98 8 10 0.0017 0.25 12.9 3.2 1 23 730 752 730 752 0.98 9 10 5.7e-05 0.0085 17.5 6.5 1 23 758 780 758 780 0.98 10 10 0.00027 0.039 15.4 0.3 1 21 786 806 786 807 0.93
Sequence Information
- Coding Sequence
- ATGGAAAGTGCGATAATAAGTAACAGTGTGTCTGCGCAGAATAGCCTTTGCAGAGTTTGTTTGTCATCGAATGAGGACAACAAGTGTATTTTCACTTTGCACAAAGGTCTTGACCACGAAAATTACAGTCTCACGGATTTGTCGGTAAAACTTCAATTGTACGGGGGCATCGAGGTTTCACGGAACGATGGATTTCCTGCAAAAATGTGCAACGAATGCATATCAAAGATGCGCGTTGCGCATTGCTTCAGGGTACAGTGCCAAGAGATGGATAGAATGTTGCGCTCCGCTTACAAAAACAACACAAACGCACGATGCTGGATGAAAGCTGAGGACGATGGTACAAAGAGAGATATCGGTGAGTGCGACGAACTACAGAAACTTGAGGAAATTTGCGGAGACGAACTCGAAAAACTTGAGGATATTTATAGCGATAAATCAAAGACGAGTCCAGGAACAGAAATCCTTGTCACTCaaaatttatccaaaaaatttgaaaaattaacgtcCTCCATTGACGGCAAGAAGCTTAACAATGCATCGGTATCAAAAAAAGAATCATATCGTTCTCATAAAACTCTTGTCGGAAAGAAAATCAACTCCGCCGACCAGTGGCAAGAATCGTGGAATTTCAGTACTGAAAAGACGATGAAAGATTGCAAGGATATCGGAGGCTCTGGCCATTCGTCCGGAGAGTCAAAGAATGATAAATACAGAGACGCACTGAAAGAGAAAGACGAGATGCCACTTTCGAAGAAAGAAACATCCAGATCTCGAAGATTCGTGGTATTCAAGCGTATGACCTCCATGCAGAGTCTGAAGAATCGCAAGGAGCAGCAGAGacagtatataaaaaaaacattacacaCGAAACACGACGGCGACGACAGAGACGTtgtacagacgaaaaaaaataatcgtgacCAGCAGGGGGAAGTATCGGACAGCAATAACGATTTGCAGAACAAATGGTGTAAATCCGGTGGATCTTATTTGAGCAAAAAATCTCTGGAAACTCACGAACTCAGTCGCGAAAATGAGAAATTTTCGTGCGACCATTGCGAACAAATATTCTGCAGCCGTGACGATTTTTTGGAACACAGAAAATTGCACGACTCGAGAGAAAAGCTGAAGCCCGCGATTTGCAAGATTTGTAACAAAAATTTTCGCAAATCCGTGACTATGGTGAGACATCTCAATGTTCACAAAAGAGACAATCCTCGGGCGGTTTATTCGATACTCAAAGATATCAGAGACAAGAGAAAACTGGGGAGCGTCGAAACTACGATTGAGAGTAAACGAGATTTTgatactttcgaaaaaaaatttgtttcggaAATTGGAAAATGTACTGCGAAATTACGGGGCGATATCGCCTTTGAGCCGTACGCGATCAACGTCGAGtcaaacaacgacgacgatcgcgaGTCTTTCGATAACAGTCGCTTTTTCGATTGCGAACAATGCGAAAAACGTTACTCCGACGAAGATTCTctgcgaaaacattttttgaaccACGAAGAACAGACCGTCGCGAGCGATTCGAAAATGTTTATCGAGAATGGAACGAAAAGTCGCGCAGAAAGTTCCGACCCCGCAAAGGACAAAACTCGGCAAAATTCCCACTTTCACCACAATTCGGAAGGGCAAAATCCACCGGACGACAGATcggcgataaaaataataaatacttgGATAAAAGAGGAATTGGATTCCGACAACGAGGGCAAAGGTTTTCCTTGCAGAAGTTGCAATAAATCTTATGTTACGAAAAAATCATTGGCGAAGCATCGAGCGAAGATACACGGAAATAATTCGGAGAGTTGCTGTTCGACTTGTCAAGTAAAGGATTGTATATGCGTCGAAAGGATCAAAGAGAGTCGCGACGAGCCGCGAGAGAAATCGAAAACTCACACGTGCGAAGAGTGCAATAAAACTTtcgagaaagaaacaaaactcGAGAAACACATGAGAATACACGCGCGTGCGAAGGAACAGCAGGATACGAATTTCAAACGTTTTCTCTGTCACATCTGCAGTAAAACCTTTCGACAGAACACCGGTCTCATGTTTCACATGCGTACGCATACGGGTTACAAACCGCACGTTTGCAAATATTGCGGTCGGGGTTTTACGTCGAATTCTAATTGCATTAATCACGAACGCACTCACACGGGCGATCGACCGTTCGTTTGTCACTTTTGTAGCGCGGCGTTCGCGAAATCTTGTACGCTAAAAGCGCACATAACTACGCACACCGGAGAGGCTAATTATCACTGTAAAACGTGCGGCAAATCTTTCAGAAGATTGAAATATCTCAAGGAACATAGGTTTACGCATACCGGTGAAAAACCGTACGCGTGCAAAATTTGCGGAACCGCCTATAGTCATTCGGGTAGTTTAttcgttcacgaaaaaaaatgcaaagctcAGCACGGCAATTATCAAGGGTTGTCGGTACCGGTATCGCAGAATTATTGTCAAAATCAATCGGTGACTATGGGAGAGTCTTCGGTAGCTATATCTCCGATTATTGGAACGCTGACCTCAACTCACGATATTAACGCGATAGATAACTCGTTAAATACGCACGAGAATAAAAATTATGTCGACGGTGTTGCGAGAATAAACGCTCATTGTACGAACGATACTACCGGCGCGCAAATTCATTCGAATACAATAAATCCTGACGTACCCACCGCGGTACGAAGTTTTACTATAATCGGTCAAATGTTTCATACGTAA
- Protein Sequence
- MESAIISNSVSAQNSLCRVCLSSNEDNKCIFTLHKGLDHENYSLTDLSVKLQLYGGIEVSRNDGFPAKMCNECISKMRVAHCFRVQCQEMDRMLRSAYKNNTNARCWMKAEDDGTKRDIGECDELQKLEEICGDELEKLEDIYSDKSKTSPGTEILVTQNLSKKFEKLTSSIDGKKLNNASVSKKESYRSHKTLVGKKINSADQWQESWNFSTEKTMKDCKDIGGSGHSSGESKNDKYRDALKEKDEMPLSKKETSRSRRFVVFKRMTSMQSLKNRKEQQRQYIKKTLHTKHDGDDRDVVQTKKNNRDQQGEVSDSNNDLQNKWCKSGGSYLSKKSLETHELSRENEKFSCDHCEQIFCSRDDFLEHRKLHDSREKLKPAICKICNKNFRKSVTMVRHLNVHKRDNPRAVYSILKDIRDKRKLGSVETTIESKRDFDTFEKKFVSEIGKCTAKLRGDIAFEPYAINVESNNDDDRESFDNSRFFDCEQCEKRYSDEDSLRKHFLNHEEQTVASDSKMFIENGTKSRAESSDPAKDKTRQNSHFHHNSEGQNPPDDRSAIKIINTWIKEELDSDNEGKGFPCRSCNKSYVTKKSLAKHRAKIHGNNSESCCSTCQVKDCICVERIKESRDEPREKSKTHTCEECNKTFEKETKLEKHMRIHARAKEQQDTNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQHGNYQGLSVPVSQNYCQNQSVTMGESSVAISPIIGTLTSTHDINAIDNSLNTHENKNYVDGVARINAHCTNDTTGAQIHSNTINPDVPTAVRSFTIIGQMFHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00398325;
- 90% Identity
- iTF_00398325;
- 80% Identity
- -