Basic Information

Gene Symbol
-
Assembly
GCA_963971235.1
Location
OZ020235.1:11487052-11492453[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00042 0.062 14.8 0.3 2 23 839 860 838 860 0.97
2 16 0.37 55 5.6 0.4 1 19 866 884 866 887 0.90
3 16 0.0012 0.17 13.4 1.9 3 23 923 944 922 944 0.98
4 16 0.0032 0.47 12.0 2.0 1 23 951 974 951 974 0.95
5 16 0.00015 0.022 16.3 0.8 1 23 980 1003 980 1003 0.94
6 16 0.54 80 5.0 0.2 2 23 1011 1031 1011 1031 0.94
7 16 7.6e-07 0.00011 23.5 2.3 2 23 1037 1058 1036 1058 0.97
8 16 2.7e-06 0.00039 21.7 0.2 1 23 1064 1086 1064 1086 0.99
9 16 0.0052 0.76 11.4 2.8 2 23 1098 1120 1097 1120 0.95
10 16 0.54 80 5.0 2.6 1 23 1126 1149 1126 1149 0.92
11 16 0.0068 1 11.0 2.0 2 23 1171 1193 1170 1193 0.95
12 16 0.0011 0.17 13.5 1.0 2 23 1200 1222 1199 1222 0.96
13 16 0.00023 0.033 15.7 2.3 2 23 1230 1251 1229 1251 0.96
14 16 0.0014 0.21 13.1 2.3 1 23 1257 1280 1257 1280 0.96
15 16 0.39 57 5.5 3.2 2 23 1287 1308 1286 1308 0.96
16 16 0.011 1.7 10.3 2.6 1 23 1314 1336 1314 1336 0.98

Sequence Information

Coding Sequence
ATGAGTGTTTCGGAGGAAGGTGTACTGTACTTTACGATTGAGGGTGATCCTGATGGAACTTTGGCAAACGATCGTGAAAATTTGACTGAGCAACAGTCCCATGCTGCACTTATTGAAGATCTCACAtcggaaaatattattattctgAACGACGGTACGTGTGACGATGGACAGATGCACGAGGATACAGCGGAATGTCAACTGCGAGACAATGTCATCGCCGTTGAGGGTACCGAGCTTCGGGGATATAGTATCGTCGAAATGGCTCCAGATTCGACGCAAAAAAATAGCAATGTACGTCCGAGAGGAAGTATCGATTCCGAAAGACTAGATCACGACTACAGCGACGTTCAATCCACCAGAAACAATCTGATAGCTCAAGAAAACACGCGTCTTACCGCGAAAAACAACAATGTATCGCTGCTCCGATCGGTGGAGCACAGAATGCCGGTATCGACGAAGGAGAGATCGATCAGTCGCGTGAAAAACATAAGCGAATTGAAGAAAGTGACTCCCAGAGTAAAGCTTGTGTCGCCGGAGGTAACAAGCTTAACGCGACTGACGACGAAAGTGAGTGTTCCAATTCATAATCCTCCGGAAAGCCGATTACCCACCGTCGACGCGTCCCgtcaaacattaaaaaattactgtCGTACCTGCGCCGGTTTGAAATTACCGCTCGTCGATATATTCAGCGAAAAAGGTATGCAGATGAGACTCAATCAACAGATGAAACACTTGGAGGAGATAAATCAACACGACAGTCTATCGACCCAAATGTGTATGGATTGCATATGCGATCTAAAGATGAGTTACAAATTTTTCATGCAAATTAAAAAAGCGCAAGTAAAGTTGCAATCGATTCACGCCTCGTTGCAATCAGCTCCGACGAATATAGCACTTATATCCGACGACGAGAGATTGCGCACATCCACGAAAACAGTTGTAACGAAGAACTGGACGACATATCCTTCCAAAAAAACGGaaaccgagaaatccgagaTCTGCTCAAGATTGCCGAGTCCCCAACAACCAGAACccatcgaaaaatcaaaaaatgatcAAATTCTCGAGGTtcagccgcgaataaaatttgaatCCGAAGTCGAGGAAGAGGACGAAGAAGAATCGGCTTTTCACGATAGCGACGAAAACGACTCGATAGAAGAATTCGATCCCGACGACCCGCCTTGTCAACCGGACACGTCTGACATTGCCGATTCGGACGGCGATTTCGTCGCTGAAACATCGGAAAATTCGCAGAACGTCGAAACCTACGATAGCCACAGTATGGAGTACAGTACGCAAATATCGTCGGAAATTGTCGAAGAAAAATCACCGATTGCGAGTAGCAACACGACGAAAACTCAGCCTAAAACAGATCCGAAAACTGATGTAAATAAAACGGTCTATCAGTACGATACGACACTCAAAGCTTATATAAAGGTAGAACCACCGGACGAAGAGAATTACGCAAGTTCGTCTCTAATAAAACCAAAATACGATCGCGATTATCCGATTGAGAGTACGAAAGAAGTTGCCAAACATCCGAATATTCTTAAGCGTAAAATTCCAgcgaaaaaggattttttaGGGAATCCCGTGGCGAACGTAAGTACGTCGGATTCGACGTTCGCCAGATCGGGAcaaaaagatacgaaaaaaccaaaattaaacGTTGAAAATGCTCTCAACATAAAAAGTGAAAACGAAGACGGTATAATGTACGTAACGGTAAAGGGTACGAAACCGAATGAGTTGTTACTCGTGAAggttaaaaaaatggataaacccGATACCaacaaaaaagacgaaaaaaagaagtcATTGGACTCTGTACCGGttgaaaaaatcctaaaaaaactCGAGCCCTTTGGGAACCGAGAGAAAGATTTTACGACCGAACGATCGAAAGCGCTGGACATTCGCGAACAAATAATCGAGGAACAAATCGAGGAGTACAAGAAAAAGCGAGAAAAAGTTCTCGGCGGTACGGCGAGTTTGCCGAACGCGTTAAAGTTCGAAGATGGATTGATACGTTTCGTAAATCCCGTCGACAATAGTGCCGACGGTAGCGTAAGAATAAAAGTCGAACCTTCCGAGGAGGTCGAGGAAATTCGTCGAGTTGTTGGTTCGCAAAACAACAACGAAGAACTCGACAAATCGGACAACGCGAAGTACAACAACACCGGCGAGTATTTATCGCGATTAGCGAAACTCAAGAGAAAGTGGGAGGAAGCGAAGAAAACAAAGGAATCCCTACAGCGCCAACTCGACCAGTCGTATACTGAgggaaatttggaaaaattggcGCGAATACTCGGCGAAAAGGAGAAGAATCTTCAAGATTTTCAGGAATATCTGAAACAGCGTAAAATCGTGATAACGCGCTTGAAGGATGAAGATATAATATCGCTTTACGAGGATCGCAACAATACGTCGTTAAAGAAAAATTTTCCCGATCTCATAGACGCGAGTACCCCGTCGGACTACATAGAGAAACAAAATTATCTCGAGTGCGATTACTGCCCGGAAACTTTCGCGCAATGCGACGTTCTCGAAGAGCATCTTAAGTCTCACGATTACAAACTAATGTATTATTGCGAGGATTGCCAAGAAGAATTTCCCACTATGAAATCCAAACGAAGCCACAATGTAACTTGTATAAAAAAACTTATATGTAAATATTGCAATCATTTGTTGGATTCGAAAGGAAAAAAGAGGCAACACGAGCAAAAACACGTGGACAGTATGTACGGTCAGTTGTGCGATGTTTGCGGCGAAAAATTTAAACACCAAGGGACGCTGGATCAGCACTTCAAAACGCAGCATATGACTTGGGAAAAAATTTATCAATGTCCAAAATGtccaaaaaaatttgctttcaaACAAAAATTAAGCTTTCATCTGAAATCCGTTCACACGACCCTTCGCGCATTTCTTTGCGAGGATTGCGGAGCGGATTTCAAGAATCCGGCATCGCTGAGACATCATAGAATACGCAAACATCAGCCGACCGGCAATAAGCGCGAATGTCCGGTATGCAACAAACTCGTGCCGTTTTATAGTCTATCGAAACACATGTACACTCACAAAGCTTATACTATTCAGTGTCCCCACTGCGACAAAATGTTTAAGAACACGTCGACGTTAAAGCAACACGTGAGAATCCACGAGGATCAGCGACAATACAGATGCGATACATGCGGTGTCGGTTTCAATCGTCGTGACGGTCTTCGATTGCACATGCGTGTGCATCAGAAGAGCGATAGTCGGGCATTGAAGGAATGTTCTTGTCAGATATGTTCCGAAAAATTTCCAAATCATTCGATGCTCGTTATTCATCGTAATCGAGTGCACAAAGACGGAAGACAATATACTTGTCATATATGCAACAGATCAATGCTATCAACGAGATCTCTCGAGTGGCACATGTCTCACATACACAACGAGACGCTACCCGGTGGTCCGAAGGAAGAAACTGAAAGCGCTCCGGAGAAAAAGAGAGTATCGTGCGTTCATTGCGACAAAACTTTTAAAACAGAAATGATACTGAGAACTCATATAAAGAATACGCATATGGAAAAAGATCCGACTAAATGTTTGGATTGCGATTTAACTTTTACTTCGGACGTTAGATTGCGACATCACATGATGGTCGCGCATAATAGACTCGAAGGAACACTTTCGTGTCCTCATTGTTCGAAACGCTTCGTCAATCAGTTACGATTGAAGACTCATATGATTTCCCATTCGGAGGACAGACCCTATACTTGCGAAATTTGCGGTTTTAATCTCAAGACGAAGATACAATTGATTAAACATCATCAGAATCGACACAGCGACGAGAGACCTCTGCAATGTCGTTACTGCCCGTGGCGATGCAAACAAGTTAGCGCTCTCGTTTGTCACGAGAGAACCCACACTAACGAGAGACCCTATTCGTGTTCTGTTTGTCGACAGAGATTCAAGTATCTCGGAGACAAAAACAAACACGAGAGACGACACGAAATTCTCGGGGGTTCCGGATTCAAGAGAATCGTTGCCGGGAGAAATTTAAAAACGCCGAAAATACAACTGGAAGAAACTTCGACGTCGGAACAGGATCCGGTGGAATACGAGAATCAGGAAGACGAGGAACAATTGAACGAAGAACAACATTACGATGAACAACAGCAATACGACGAACAACAGGATGGCGAATACGATGGTGAAAAGTTTGACGCTCAGGAAATCGTTAAATTTGAATCGGAAGAAATTGGCGAAGAATACGAACAAACCTACGAACAGGAATACGAGGAAACGTCGAGAGAAGCATCGGAAGCTGCTGAAGTGATAATGAATATGGAAGATACAACGGTTTATACGGAGGAAGTAACAGCTGATAATATCGAAAATGCCGAAATGATTACCGAAGAGATGATGACGAATCAGATATTGCAGTCGGGTACTGTCGTTCATCTGGAGCAACAGGACGACACGGGTAAAATTCAAGTGATACCTGTGATGCTCTCGTTGCCTGACCTCAGTGATTCGAGTGCCGAAGTCAATTTGGCCACCGCGTCGATAATGTATAATACCTAA
Protein Sequence
MSVSEEGVLYFTIEGDPDGTLANDRENLTEQQSHAALIEDLTSENIIILNDGTCDDGQMHEDTAECQLRDNVIAVEGTELRGYSIVEMAPDSTQKNSNVRPRGSIDSERLDHDYSDVQSTRNNLIAQENTRLTAKNNNVSLLRSVEHRMPVSTKERSISRVKNISELKKVTPRVKLVSPEVTSLTRLTTKVSVPIHNPPESRLPTVDASRQTLKNYCRTCAGLKLPLVDIFSEKGMQMRLNQQMKHLEEINQHDSLSTQMCMDCICDLKMSYKFFMQIKKAQVKLQSIHASLQSAPTNIALISDDERLRTSTKTVVTKNWTTYPSKKTETEKSEICSRLPSPQQPEPIEKSKNDQILEVQPRIKFESEVEEEDEEESAFHDSDENDSIEEFDPDDPPCQPDTSDIADSDGDFVAETSENSQNVETYDSHSMEYSTQISSEIVEEKSPIASSNTTKTQPKTDPKTDVNKTVYQYDTTLKAYIKVEPPDEENYASSSLIKPKYDRDYPIESTKEVAKHPNILKRKIPAKKDFLGNPVANVSTSDSTFARSGQKDTKKPKLNVENALNIKSENEDGIMYVTVKGTKPNELLLVKVKKMDKPDTNKKDEKKKSLDSVPVEKILKKLEPFGNREKDFTTERSKALDIREQIIEEQIEEYKKKREKVLGGTASLPNALKFEDGLIRFVNPVDNSADGSVRIKVEPSEEVEEIRRVVGSQNNNEELDKSDNAKYNNTGEYLSRLAKLKRKWEEAKKTKESLQRQLDQSYTEGNLEKLARILGEKEKNLQDFQEYLKQRKIVITRLKDEDIISLYEDRNNTSLKKNFPDLIDASTPSDYIEKQNYLECDYCPETFAQCDVLEEHLKSHDYKLMYYCEDCQEEFPTMKSKRSHNVTCIKKLICKYCNHLLDSKGKKRQHEQKHVDSMYGQLCDVCGEKFKHQGTLDQHFKTQHMTWEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAFLCEDCGADFKNPASLRHHRIRKHQPTGNKRECPVCNKLVPFYSLSKHMYTHKAYTIQCPHCDKMFKNTSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHQKSDSRALKECSCQICSEKFPNHSMLVIHRNRVHKDGRQYTCHICNRSMLSTRSLEWHMSHIHNETLPGGPKEETESAPEKKRVSCVHCDKTFKTEMILRTHIKNTHMEKDPTKCLDCDLTFTSDVRLRHHMMVAHNRLEGTLSCPHCSKRFVNQLRLKTHMISHSEDRPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHEILGGSGFKRIVAGRNLKTPKIQLEETSTSEQDPVEYENQEDEEQLNEEQHYDEQQQYDEQQDGEYDGEKFDAQEIVKFESEEIGEEYEQTYEQEYEETSREASEAAEVIMNMEDTTVYTEEVTADNIENAEMITEEMMTNQILQSGTVVHLEQQDDTGKIQVIPVMLSLPDLSDSSAEVNLATASIMYNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01364878;
90% Identity
iTF_00841326;
80% Identity
-