Carm025411.1
Basic Information
- Insect
- Cryptus armator
- Gene Symbol
- -
- Assembly
- GCA_963971235.1
- Location
- OZ020235.1:19239851-19246864[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.47 70 5.2 1.3 2 22 12 32 11 32 0.95 2 21 0.0068 1 11.0 0.6 1 21 58 78 58 79 0.95 3 21 0.0016 0.24 13.0 0.2 1 21 96 116 96 117 0.96 4 21 0.015 2.3 9.9 0.2 1 14 125 138 125 141 0.91 5 21 0.0062 0.92 11.1 0.2 1 21 153 173 153 174 0.94 6 21 4.5e-05 0.0067 17.9 0.6 1 21 198 218 198 219 0.96 7 21 0.19 28 6.5 0.2 1 15 227 241 227 244 0.88 8 21 0.0012 0.18 13.4 1.9 1 21 255 275 255 276 0.96 9 21 0.00091 0.14 13.8 0.1 1 20 300 319 300 321 0.95 10 21 0.39 58 5.5 0.2 1 14 329 342 329 346 0.85 11 21 0.0048 0.71 11.5 0.1 2 21 365 384 364 385 0.95 12 21 0.00046 0.068 14.7 0.1 1 21 409 429 409 430 0.96 13 21 0.0011 0.16 13.5 1.2 1 23 438 460 438 461 0.96 14 21 0.22 32 6.3 0.8 1 21 470 490 470 491 0.95 15 21 0.4 59 5.5 1.0 1 21 517 537 517 538 0.94 16 21 0.0034 0.5 12.0 0.5 1 22 562 583 562 583 0.96 17 21 0.084 12 7.6 0.7 1 15 591 605 591 607 0.90 18 21 1.5 2.2e+02 3.6 1.7 3 22 623 642 622 642 0.94 19 21 0.0042 0.62 11.7 0.9 1 22 666 687 666 687 0.95 20 21 1.2 1.8e+02 3.9 0.2 2 11 696 705 695 713 0.84 21 21 0.0067 0.99 11.0 1.8 1 23 732 755 732 755 0.88
Sequence Information
- Coding Sequence
- ATGGAAAATAGAAGTCAATCGCCGTTTGAGAGCACTTGCCATTCCTGCAATGTTACTTTAAACAGCGATCAACAATTTATGAAACACCTGAGAATGGGATGCTTCGCGAATTCTCCGATTCCGATGCCACAAATTGTGAAAAAGGAAAAGGGAAGAAAATCTTCGATCTCATATGTTTGCAATTTTTGCAACGCTCCCTTTGCCCACAAACGGACATTTATACTACACTTGAACAATGGTTGTCCGAAAGAAGGAGAAAAGAGGAATACAAGgagatcgagaaattacgtttgTCCGCGATGTTCACACGGTTACAATGATAAAGGATCGCTGATTAGTCATCTTCGCTTAGAATGCGGACAGGAGCCGAAATTCAAGTGTCCTTATTGTGATTTGCCGTTTAAACAACCGCAGAGTGCCGTAAAAGTGGAAGCggacgaaaaaacatcgaatgcgTACATTTGCCTTTTCTGCGACGGTGACTTTCGCCGAATGGCAAACTTGAAACGACACGTAAAGGAAGGCTGTCCAATGGGTCCTGCATTCACGAACGAACTAATACCAAAGCGAAAGATTCCGCAATCAAAAAATTACATTTGTCCAAAATGCTCTCGCGGATACAAAACTAAAGAATCACTGAAGAATCATCGCCGTTGGTCATGCGGACAGAAGCCACGTTTCAAGTGTCCCTATTGCAACGTTCGAGTGAAACGACCACACGATGCTATAAAAATAGAGGTGGAAGAAGAAACTACGGGTGCCTACATTTGCCATTTCTGCAATGATCCCTTCGGCAATCAGAAACACTTGGAACGACATATGAAGAACGGTTGCCCAATGGACGCTACATGCACTGGCAAAAAAGAACCAAAGTGCGGTACTAAgaaatcgaggaattacatttGTCCGAAATGTTCTCTCGATTTCAAGAATCTTTATGCTCTGAAAGCTCATCGCACGTGGGCGTGTGGACAATCGCCACGATACAAGTGTCCCTATTGCAACGTACGAGCGAAGCGACCATACGATGCTATAAAAGTCGAAGAAGTCGAAGTGGAAGAAGAATTCGTACGTTTACCATCGACTTCGAAAGTTTGCCATTTCTGCAATCTTCCCTTTGTCATGACGGGAGCATTGCAGCGACACATGAATGCAGGATGTCTAATGGATCCATCGTTTACGGTCGAAGAAAGACAAAAGCGCAATGCTAAAAAATCGAGGAAATACGTTTGTTCGGGATGTTTTCTCGGTTACAAGAGAGAATCATCTCTGCGCGCTCACCTTCGTTTAGAATGCGGAAAAGTCGCGCGATACAAGTGTCCCTATTGCAACTATCAAGCGAAGCGACCATACCCTGTTCGTGATCACATTCGACTCCATCATCGCGGCATGAAAAGATCGAGGAATTACTTTTGTTCGCGATGCTTTCACGGTTACGAGAGTAAAGGAACGCTGAGCGATCATCTTCGCGCGGAATGCGGACAATCACCGAAATACAAGTGTCCTTATTTCTCGAAAACGAAAGGCGGAAGGAAAACTTCTCGAATGCATTATTGCAAATTCTGCAATGATCCCTTTGTCAACGAGAGATACGTGGAGCGACACTTAAAAAACGGTTGCGTTATGGATCCGTCcttctcgatcgagaaaagacaAGAGCTCAATGCTTCgagatcgagaaattacgtttgTTCGAGATGTTTTCTCGGTTACAAGAATAAAAAATCACTGAGCGCTCATCTTCGCATGGAGTGCGGAAAAGAGCCGAAATTTAAATGTCCCTATTGCGACTGGAGGTCGAAGCAACGAACGAATATTTATATTTCGGATATGGAAAGTGGAAGAGAAATTTCGAGTTCGAATCATTGCACATTCTGCAATGATCCCTTTCCCAACGCTAAATGCGTGGAGCGACATATTAAAAGAGGTTGCGTTATGGATCCCGAATTCTCGATTGAAAAAAGACAAATGCTGAATGCTATAAGAAAGAGAAATCACGTGTGTTCGAGATGCTTTCTCGGTTACAAGAACAAAACATCACTGACCGCTCATCTTCGCATGGAATGCGGACGACAGCCGAAATTAAAGTGTCCCTATTGCGATTGGAGAACGAAACTTCCACACGCCGGTTATAAACACAATAAAGGAGCGCTGACTTATCATCTTCGCTTCGATTGCGGCAAAGAACCGAAATTCCAGTGTCCCCATTGTGATTCAACGTTTAATCGAAGCTCCGCTGGTTACGCTCACGTGCGTTTTCGCCATCCTAAAATGGAAGTATATTTGTTTGAgatctga
- Protein Sequence
- MENRSQSPFESTCHSCNVTLNSDQQFMKHLRMGCFANSPIPMPQIVKKEKGRKSSISYVCNFCNAPFAHKRTFILHLNNGCPKEGEKRNTRRSRNYVCPRCSHGYNDKGSLISHLRLECGQEPKFKCPYCDLPFKQPQSAVKVEADEKTSNAYICLFCDGDFRRMANLKRHVKEGCPMGPAFTNELIPKRKIPQSKNYICPKCSRGYKTKESLKNHRRWSCGQKPRFKCPYCNVRVKRPHDAIKIEVEEETTGAYICHFCNDPFGNQKHLERHMKNGCPMDATCTGKKEPKCGTKKSRNYICPKCSLDFKNLYALKAHRTWACGQSPRYKCPYCNVRAKRPYDAIKVEEVEVEEEFVRLPSTSKVCHFCNLPFVMTGALQRHMNAGCLMDPSFTVEERQKRNAKKSRKYVCSGCFLGYKRESSLRAHLRLECGKVARYKCPYCNYQAKRPYPVRDHIRLHHRGMKRSRNYFCSRCFHGYESKGTLSDHLRAECGQSPKYKCPYFSKTKGGRKTSRMHYCKFCNDPFVNERYVERHLKNGCVMDPSFSIEKRQELNASRSRNYVCSRCFLGYKNKKSLSAHLRMECGKEPKFKCPYCDWRSKQRTNIYISDMESGREISSSNHCTFCNDPFPNAKCVERHIKRGCVMDPEFSIEKRQMLNAIRKRNHVCSRCFLGYKNKTSLTAHLRMECGRQPKLKCPYCDWRTKLPHAGYKHNKGALTYHLRFDCGKEPKFQCPHCDSTFNRSSAGYAHVRFRHPKMEVYLFEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -